Cluster: CGMR094644_CGC5
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR094644
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_63449 | k141_63449_12 | 12916 | 14316 | + | GH1 |
| TC | k141_63449 | k141_63449_13 | 14437 | 15789 | + | 4.A.3.2.9 |
| TC | k141_63449 | k141_63449_14 | 15942 | 16244 | + | 4.A.3.2.9 |
| TC | k141_63449 | k141_63449_15 | 16254 | 16586 | + | 4.A.3.2.3 |
| pfam | k141_63449 | k141_63449_16 | 16828 | 17781 | + | ROK |
| pfam | k141_63449 | k141_63449_17 | 17941 | 18864 | + | DHH | DHHA2 |
| TC | k141_63449 | k141_63449_18 | 19132 | 20490 | + | 2.A.33.1.1 |
Gene ID: k141_63449_12
Type: CAZyme
Location: 12916 - 14316 (+)
Type: CAZyme
Location: 12916 - 14316 (+)
Gene ID: k141_63449_13
Type: TC
Location: 14437 - 15789 (+)
Type: TC
Location: 14437 - 15789 (+)
Gene ID: k141_63449_14
Type: TC
Location: 15942 - 16244 (+)
Type: TC
Location: 15942 - 16244 (+)
Gene ID: k141_63449_15
Type: TC
Location: 16254 - 16586 (+)
Type: TC
Location: 16254 - 16586 (+)
Gene ID: k141_63449_16
Type: pfam
Location: 16828 - 17781 (+)
Type: pfam
Location: 16828 - 17781 (+)
Gene ID: k141_63449_17
Type: pfam
Location: 17941 - 18864 (+)
Type: pfam
Location: 17941 - 18864 (+)
Gene ID: k141_63449_18
Type: TC
Location: 19132 - 20490 (+)
Type: TC
Location: 19132 - 20490 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902469555
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_63449_14 | vegan > omnivore | 1.04132 | 0.00863 |