Cluster: CGMR094644_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR094644
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_49660 | k141_49660_23 | 24739 | 25227 | + | 4.A.6.1.9 |
| TC | k141_49660 | k141_49660_24 | 25300 | 26157 | + | 4.A.6.1.1 |
| TC | k141_49660 | k141_49660_25 | 26157 | 26984 | + | 4.A.6.1.6 |
| NULL(UNKNOWN) | k141_49660 | k141_49660_26 | 27180 | 27506 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | k141_49660 | k141_49660_27 | 27611 | 28051 | + | MarR |
| CAZyme | k141_49660 | k141_49660_28 | 28565 | 34978 | + | GH31_18 |
Gene ID: k141_49660_23
Type: TC
Location: 24739 - 25227 (+)
Type: TC
Location: 24739 - 25227 (+)
Gene ID: k141_49660_24
Type: TC
Location: 25300 - 26157 (+)
Type: TC
Location: 25300 - 26157 (+)
Gene ID: k141_49660_25
Type: TC
Location: 26157 - 26984 (+)
Type: TC
Location: 26157 - 26984 (+)
Gene ID: k141_49660_26
Type:
Location: 27180 - 27506 (+)
Type:
Location: 27180 - 27506 (+)
Gene ID: k141_49660_27
Type: TF
Location: 27611 - 28051 (+)
Type: TF
Location: 27611 - 28051 (+)
Gene ID: k141_49660_28
Type: CAZyme
Location: 28565 - 34978 (+)
Type: CAZyme
Location: 28565 - 34978 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902469555
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_49660_28 | vegetarian > omnivore | 1.32802 | 0.04127 |
| k141_49660_28 | vegetarian > vegan | 1.96098 | 0.01195 |