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Cluster: CGMR094357_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC k141_42378 k141_42378_33 30910 32754 - 3.A.1.106.2
TF k141_42378 k141_42378_34 32831 33721 - HTH_AraC | HTH_AraC
pfam k141_42378 k141_42378_35 33825 34169 + CMD
CAZyme k141_42378 k141_42378_36 34240 35295 - GT9
pfam k141_42378 k141_42378_37 35397 35705 - MORN_2 | MORN_2 | MORN_2
pfam k141_42378 k141_42378_38 36005 36730 + RIO1 | APH | Kdo
TC k141_42378 k141_42378_39 36775 38604 - 2.A.37.1.10
CAZyme k141_42378 k141_42378_40 38849 40306 - GT101
Gene ID: k141_42378_33
Type: TC
Location: 30910 - 32754 (-)
Gene ID: k141_42378_34
Type: TF
Location: 32831 - 33721 (-)
Gene ID: k141_42378_35
Type: pfam
Location: 33825 - 34169 (+)
Gene ID: k141_42378_36
Type: CAZyme
Location: 34240 - 35295 (-)
Gene ID: k141_42378_37
Type: pfam
Location: 35397 - 35705 (-)
Gene ID: k141_42378_38
Type: pfam
Location: 36005 - 36730 (+)
Gene ID: k141_42378_39
Type: TC
Location: 36775 - 38604 (-)
Gene ID: k141_42378_40
Type: CAZyme
Location: 38849 - 40306 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
k141_42378_33 vegetarian > vegan 1.05718 0.01056
k141_42378_34 vegetarian > vegan 1.18378 0.01056
k141_42378_35 vegan > omnivore 1.21032 0.00918
k141_42378_35 vegetarian > omnivore 1.58995 0.00397
k141_42378_36 vegetarian > omnivore 1.45515 0.00397
k141_42378_36 vegetarian > vegan 1.21630 0.01056

🧭 Explore Read Mapping of CGC

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