Cluster: CGMR094357_CGC8
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR094357
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_46509 | k141_46509_6 | 5010 | 6137 | + | GH102 |
| pfam | k141_46509 | k141_46509_7 | 6137 | 6898 | + | ThiF |
| TC | k141_46509 | k141_46509_8 | 7066 | 8058 | + | 3.A.1.15.5 |
| pfam | k141_46509 | k141_46509_9 | 8178 | 10313 | + | UPF0020 | THUMP | Cons_hypoth95 | Methyltrans_SAM | RlmL_1st |
| TC | k141_46509 | k141_46509_10 | 10349 | 12253 | - | 2.A.37.1.2 |
Gene ID: k141_46509_6
Type: CAZyme
Location: 5010 - 6137 (+)
Type: CAZyme
Location: 5010 - 6137 (+)
Gene ID: k141_46509_7
Type: pfam
Location: 6137 - 6898 (+)
Type: pfam
Location: 6137 - 6898 (+)
Gene ID: k141_46509_8
Type: TC
Location: 7066 - 8058 (+)
Type: TC
Location: 7066 - 8058 (+)
Gene ID: k141_46509_9
Type: pfam
Location: 8178 - 10313 (+)
Type: pfam
Location: 8178 - 10313 (+)
Gene ID: k141_46509_10
Type: TC
Location: 10349 - 12253 (-)
Type: TC
Location: 10349 - 12253 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_46509_6 | vegetarian > omnivore | 1.16939 | 0.00397 |
| k141_46509_7 | vegan > omnivore | 1.47373 | 0.00918 |
| k141_46509_7 | vegetarian > omnivore | 1.54621 | 0.00397 |
| k141_46509_9 | vegan > omnivore | 1.35562 | 0.00918 |
| k141_46509_9 | vegetarian > omnivore | 1.36367 | 0.00397 |
| k141_46509_10 | vegetarian > omnivore | 1.01623 | 0.00397 |