Cluster: CGMR094357_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR094357
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_35489 | k141_35489_50 | 47685 | 48716 | + | GT9 |
| TC | k141_35489 | k141_35489_51 | 48666 | 49331 | - | 2.A.115.2.7 |
| pfam | k141_35489 | k141_35489_52 | 49522 | 51063 | + | PFL-like | YjjI-like |
| TC | k141_35489 | k141_35489_53 | 51105 | 52970 | - | 2.A.16.2.2 |
| TC | k141_35489 | k141_35489_54 | 52970 | 53275 | - | 9.B.21.2.1 |
Gene ID: k141_35489_50
Type: CAZyme
Location: 47685 - 48716 (+)
Type: CAZyme
Location: 47685 - 48716 (+)
Gene ID: k141_35489_51
Type: TC
Location: 48666 - 49331 (-)
Type: TC
Location: 48666 - 49331 (-)
Gene ID: k141_35489_52
Type: pfam
Location: 49522 - 51063 (+)
Type: pfam
Location: 49522 - 51063 (+)
Gene ID: k141_35489_53
Type: TC
Location: 51105 - 52970 (-)
Type: TC
Location: 51105 - 52970 (-)
Gene ID: k141_35489_54
Type: TC
Location: 52970 - 53275 (-)
Type: TC
Location: 52970 - 53275 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_35489_50 | vegan > omnivore | 1.39913 | 0.00918 |
| k141_35489_50 | vegetarian > omnivore | 1.20765 | 0.00397 |
| k141_35489_51 | vegan > omnivore | 1.25381 | 0.00918 |
| k141_35489_51 | vegetarian > omnivore | 1.47539 | 0.00397 |