Cluster: CGMR094357_CGC13
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: CGMR094357
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_50369 | k141_50369_3 | 1214 | 2104 | + | 3.A.1.14.1 |
| TC | k141_50369 | k141_50369_4 | 2104 | 3093 | + | 3.A.1.14.1 |
| TC | k141_50369 | k141_50369_5 | 3093 | 4076 | + | 3.A.1.14.1 |
| TC | k141_50369 | k141_50369_6 | 4076 | 4843 | + | 3.A.1.14.8 |
| TC | k141_50369 | k141_50369_7 | 5061 | 7478 | + | 1.B.55.1.3 |
| CAZyme | k141_50369 | k141_50369_8 | 7500 | 9422 | + | CE4 | GH153 |
| CAZyme | k141_50369 | k141_50369_9 | 9425 | 10666 | + | GT2 |
Gene ID: k141_50369_3
Type: TC
Location: 1214 - 2104 (+)
Type: TC
Location: 1214 - 2104 (+)
Gene ID: k141_50369_4
Type: TC
Location: 2104 - 3093 (+)
Type: TC
Location: 2104 - 3093 (+)
Gene ID: k141_50369_5
Type: TC
Location: 3093 - 4076 (+)
Type: TC
Location: 3093 - 4076 (+)
Gene ID: k141_50369_6
Type: TC
Location: 4076 - 4843 (+)
Type: TC
Location: 4076 - 4843 (+)
Gene ID: k141_50369_7
Type: TC
Location: 5061 - 7478 (+)
Type: TC
Location: 5061 - 7478 (+)
Gene ID: k141_50369_8
Type: CAZyme
Location: 7500 - 9422 (+)
Type: CAZyme
Location: 7500 - 9422 (+)
Gene ID: k141_50369_9
Type: CAZyme
Location: 9425 - 10666 (+)
Type: CAZyme
Location: 9425 - 10666 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_50369_3 | vegetarian > omnivore | 1.48961 | 0.00397 |
| k141_50369_4 | vegetarian > omnivore | 1.40194 | 0.00397 |