Cluster: CGMR094357_CGC11
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR094357
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_13684 | k141_13684_2 | 833 | 1714 | + | 3.A.1.15.4 |
| TC | k141_13684 | k141_13684_3 | 1714 | 2610 | + | 3.A.1.15.4 |
| TC | k141_13684 | k141_13684_4 | 2614 | 3465 | + | 3.A.1.15.4 |
| TC | k141_13684 | k141_13684_5 | 3458 | 4291 | + | 3.A.1.15.4 |
| pfam | k141_13684 | k141_13684_6 | 4325 | 5497 | - | MTS | tRNA_U5-meth_tr | Methyltransf_25 | Methyltransf_31 |
| CAZyme | k141_13684 | k141_13684_7 | 5494 | 6537 | - | GH3 |
Gene ID: k141_13684_2
Type: TC
Location: 833 - 1714 (+)
Type: TC
Location: 833 - 1714 (+)
Gene ID: k141_13684_3
Type: TC
Location: 1714 - 2610 (+)
Type: TC
Location: 1714 - 2610 (+)
Gene ID: k141_13684_4
Type: TC
Location: 2614 - 3465 (+)
Type: TC
Location: 2614 - 3465 (+)
Gene ID: k141_13684_5
Type: TC
Location: 3458 - 4291 (+)
Type: TC
Location: 3458 - 4291 (+)
Gene ID: k141_13684_6
Type: pfam
Location: 4325 - 5497 (-)
Type: pfam
Location: 4325 - 5497 (-)
Gene ID: k141_13684_7
Type: CAZyme
Location: 5494 - 6537 (-)
Type: CAZyme
Location: 5494 - 6537 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_13684_4 | vegan > omnivore | 2.22265 | 0.00918 |
| k141_13684_4 | vegetarian > omnivore | 1.35467 | 0.00397 |
| k141_13684_5 | vegan > omnivore | 2.11128 | 0.00918 |
| k141_13684_5 | vegetarian > omnivore | 1.37077 | 0.00397 |
| k141_13684_6 | vegetarian > omnivore | 1.13462 | 0.00397 |