Cluster: CGMR093181_CGC11
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR093181
- CGC Family ID: CGCFAM_00836
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_83666 | k141_83666_1 | 2 | 1849 | + | GT107 | GT107 |
| pfam | k141_83666 | k141_83666_2 | 1835 | 2980 | - | PLA1 |
| TC | k141_83666 | k141_83666_3 | 3060 | 3824 | + | 3.A.1.101.1 |
| TC | k141_83666 | k141_83666_4 | 3821 | 4480 | + | 3.A.1.101.1 |
| TC | k141_83666 | k141_83666_5 | 4481 | 5608 | + | 8.A.4.1.1 |
| TC | k141_83666 | k141_83666_6 | 5608 | 7320 | + | 1.B.18.1.2 |
| TC | k141_83666 | k141_83666_7 | 7328 | 8503 | + | 9.A.41.1.3 |
Gene ID: k141_83666_1
Type: CAZyme
Location: 2 - 1849 (+)
Type: CAZyme
Location: 2 - 1849 (+)
Gene ID: k141_83666_2
Type: pfam
Location: 1835 - 2980 (-)
Type: pfam
Location: 1835 - 2980 (-)
Gene ID: k141_83666_3
Type: TC
Location: 3060 - 3824 (+)
Type: TC
Location: 3060 - 3824 (+)
Gene ID: k141_83666_4
Type: TC
Location: 3821 - 4480 (+)
Type: TC
Location: 3821 - 4480 (+)
Gene ID: k141_83666_5
Type: TC
Location: 4481 - 5608 (+)
Type: TC
Location: 4481 - 5608 (+)
Gene ID: k141_83666_6
Type: TC
Location: 5608 - 7320 (+)
Type: TC
Location: 5608 - 7320 (+)
Gene ID: k141_83666_7
Type: TC
Location: 7328 - 8503 (+)
Type: TC
Location: 7328 - 8503 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Campylobacterota
Class
Campylobacteria
Order
Campylobacterales
Family
Helicobacteraceae
Genus
Helicobacter_D
Species
Helicobacter_D colisuis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.