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Cluster: CGMR092803_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC k141_117633 k141_117633_2 460 1434 + 3.A.1.1.29
TC k141_117633 k141_117633_3 1447 2379 + 3.A.1.1.29
TC k141_117633 k141_117633_4 2415 4070 + 3.A.1.1.29
TF k141_117633 k141_117633_5 4817 6238 + HTH_AraC | HTH_AraC
TC k141_117633 k141_117633_6 6297 8084 - 8.A.59.2.1
pfam k141_117633 k141_117633_7 8097 8699 - DUF624
TC k141_117633 k141_117633_8 8928 9869 + 3.A.1.1.29
TC k141_117633 k141_117633_9 9885 10835 + 3.A.1.1.29
pfam k141_117633 k141_117633_10 10861 12624 + SBP_bac_1
pfam k141_117633 k141_117633_11 13623 14270 + Lipase_GDSL | Lipase_GDSL_2
CAZyme k141_117633 k141_117633_12 14275 15732 + GH29
peptidase k141_117633 k141_117633_13 15743 16540 + S09.UPW
CAZyme k141_117633 k141_117633_14 17229 18722 + CBM91 | GH43_12
pfam k141_117633 k141_117633_15 18737 19651 + ROK
CAZyme k141_117633 k141_117633_16 19652 21121 + GH1
CAZyme k141_117633 k141_117633_17 21161 23461 + GH31_3
CAZyme k141_117633 k141_117633_18 23475 25508 + GH42
Gene ID: k141_117633_2
Type: TC
Location: 460 - 1434 (+)
Gene ID: k141_117633_3
Type: TC
Location: 1447 - 2379 (+)
Gene ID: k141_117633_4
Type: TC
Location: 2415 - 4070 (+)
Gene ID: k141_117633_5
Type: TF
Location: 4817 - 6238 (+)
Gene ID: k141_117633_6
Type: TC
Location: 6297 - 8084 (-)
Gene ID: k141_117633_7
Type: pfam
Location: 8097 - 8699 (-)
Gene ID: k141_117633_8
Type: TC
Location: 8928 - 9869 (+)
Gene ID: k141_117633_9
Type: TC
Location: 9885 - 10835 (+)
Gene ID: k141_117633_10
Type: pfam
Location: 10861 - 12624 (+)
Gene ID: k141_117633_11
Type: pfam
Location: 13623 - 14270 (+)
Gene ID: k141_117633_12
Type: CAZyme
Location: 14275 - 15732 (+)
Gene ID: k141_117633_13
Type: peptidase
Location: 15743 - 16540 (+)
Gene ID: k141_117633_14
Type: CAZyme
Location: 17229 - 18722 (+)
Gene ID: k141_117633_15
Type: pfam
Location: 18737 - 19651 (+)
Gene ID: k141_117633_16
Type: CAZyme
Location: 19652 - 21121 (+)
Gene ID: k141_117633_17
Type: CAZyme
Location: 21161 - 23461 (+)
Gene ID: k141_117633_18
Type: CAZyme
Location: 23475 - 25508 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota
→
Class
Bacilli
→
Order
Lactobacillales
→
Family
Aerococcaceae
→
Genus
Fundicoccus
→
Species
Fundicoccus ignavus

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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