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Cluster: CGMR090909_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme k141_259834 k141_259834_3 1417 4437 + GH2
TF k141_259834 k141_259834_4 4434 5471 + LacI
STP k141_259834 k141_259834_5 5484 6791 + SBP_bac_1
TC k141_259834 k141_259834_6 6810 7748 + 3.A.1.1.18
TC k141_259834 k141_259834_7 7750 8664 + 3.A.1.1.36
TC k141_259834 k141_259834_8 8677 10191 - 2.A.80.1.4
pfam k141_259834 k141_259834_9 10207 10404 - TctB
NULL(UNKNOWN) k141_259834 k141_259834_10 10425 10787 - NULL(UNKNOWN)
[View Structural Homologs]
TC k141_259834 k141_259834_11 10784 11455 - 2.A.80.1.4
pfam k141_259834 k141_259834_12 11467 12864 - Nramp
TC k141_259834 k141_259834_13 12955 14550 + 3.A.25.1.1
Gene ID: k141_259834_3
Type: CAZyme
Location: 1417 - 4437 (+)
Gene ID: k141_259834_4
Type: TF
Location: 4434 - 5471 (+)
Gene ID: k141_259834_5
Type: STP
Location: 5484 - 6791 (+)
Gene ID: k141_259834_6
Type: TC
Location: 6810 - 7748 (+)
Gene ID: k141_259834_7
Type: TC
Location: 7750 - 8664 (+)
Gene ID: k141_259834_8
Type: TC
Location: 8677 - 10191 (-)
Gene ID: k141_259834_9
Type: pfam
Location: 10207 - 10404 (-)
Gene ID: k141_259834_10
Type:
Location: 10425 - 10787 (-)
Gene ID: k141_259834_11
Type: TC
Location: 10784 - 11455 (-)
Gene ID: k141_259834_12
Type: pfam
Location: 11467 - 12864 (-)
Gene ID: k141_259834_13
Type: TC
Location: 12955 - 14550 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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