Cluster: CGMR089811_CGC6
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR089811
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_222435 | k141_222435_16 | 19254 | 20756 | - | GH1 |
| pfam | k141_222435 | k141_222435_17 | 20961 | 22154 | + | AP_endonuc_2 |
| NULL(UNKNOWN) | k141_222435 | k141_222435_18 | 22189 | 22374 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_222435 | k141_222435_19 | 22503 | 23690 | - | 3.A.1.2.5 |
| TC | k141_222435 | k141_222435_20 | 23696 | 25225 | - | 3.A.1.2.22 |
| TC | k141_222435 | k141_222435_21 | 25403 | 26533 | - | 3.A.1.2.5 |
Gene ID: k141_222435_16
Type: CAZyme
Location: 19254 - 20756 (-)
Type: CAZyme
Location: 19254 - 20756 (-)
Gene ID: k141_222435_17
Type: pfam
Location: 20961 - 22154 (+)
Type: pfam
Location: 20961 - 22154 (+)
Gene ID: k141_222435_18
Type:
Location: 22189 - 22374 (-)
Type:
Location: 22189 - 22374 (-)
Gene ID: k141_222435_19
Type: TC
Location: 22503 - 23690 (-)
Type: TC
Location: 22503 - 23690 (-)
Gene ID: k141_222435_20
Type: TC
Location: 23696 - 25225 (-)
Type: TC
Location: 23696 - 25225 (-)
Gene ID: k141_222435_21
Type: TC
Location: 25403 - 26533 (-)
Type: TC
Location: 25403 - 26533 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Microbacteriaceae
Genus
Clavibacter
Species
Clavibacter michiganensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.