Cluster: CGMR089811_CGC5
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR089811
- CGC Family ID: CGCFAM_08982
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_323012 | k141_323012_11 | 6613 | 7980 | + | 2.A.1.21.3 |
| pfam | k141_323012 | k141_323012_12 | 7977 | 8480 | - | TPR_5 |
| TF | k141_323012 | k141_323012_13 | 8509 | 9519 | - | LacI |
| TC | k141_323012 | k141_323012_14 | 9746 | 11038 | + | 3.A.1.1.21 |
| TC | k141_323012 | k141_323012_15 | 11049 | 12074 | + | 3.A.1.1.25 |
| TC | k141_323012 | k141_323012_16 | 12071 | 12976 | + | 3.A.1.1.39 |
| CAZyme | k141_323012 | k141_323012_17 | 12973 | 15354 | + | GH3 |
Gene ID: k141_323012_11
Type: TC
Location: 6613 - 7980 (+)
Type: TC
Location: 6613 - 7980 (+)
Gene ID: k141_323012_12
Type: pfam
Location: 7977 - 8480 (-)
Type: pfam
Location: 7977 - 8480 (-)
Gene ID: k141_323012_13
Type: TF
Location: 8509 - 9519 (-)
Type: TF
Location: 8509 - 9519 (-)
Gene ID: k141_323012_14
Type: TC
Location: 9746 - 11038 (+)
Type: TC
Location: 9746 - 11038 (+)
Gene ID: k141_323012_15
Type: TC
Location: 11049 - 12074 (+)
Type: TC
Location: 11049 - 12074 (+)
Gene ID: k141_323012_16
Type: TC
Location: 12071 - 12976 (+)
Type: TC
Location: 12071 - 12976 (+)
Gene ID: k141_323012_17
Type: CAZyme
Location: 12973 - 15354 (+)
Type: CAZyme
Location: 12973 - 15354 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Microbacteriaceae
Genus
Clavibacter
Species
Clavibacter michiganensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.