Cluster: CGMR089811_CGC39
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 5
- Substrate:
- Genome ID: CGMR089811
- CGC Family ID: CGCFAM_08984
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_139423 | k141_139423_9 | 9232 | 10050 | - | CE5 |
| NULL(UNKNOWN) | k141_139423 | k141_139423_10 | 10537 | 10914 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | k141_139423 | k141_139423_11 | 11007 | 11618 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_139423 | k141_139423_12 | 11802 | 12803 | + | GH26 |
| CAZyme | k141_139423 | k141_139423_13 | 12916 | 14313 | + | GH26 |
| pfam | k141_139423 | k141_139423_14 | 14441 | 15751 | + | Abhydrolase_8 |
| pfam | k141_139423 | k141_139423_15 | 15943 | 16980 | + | Virulence_RhuM |
| CAZyme | k141_139423 | k141_139423_16 | 17102 | 18238 | - | GT9 |
| TF | k141_139423 | k141_139423_17 | 18324 | 19316 | - | LacI |
| TC | k141_139423 | k141_139423_18 | 19459 | 20433 | + | 3.A.1.1.48 |
| TC | k141_139423 | k141_139423_19 | 20436 | 21386 | + | 3.A.1.1.48 |
| STP | k141_139423 | k141_139423_20 | 21448 | 22803 | + | SBP_bac_1 |
| CAZyme | k141_139423 | k141_139423_21 | 22885 | 24318 | + | GH35 |
Gene ID: k141_139423_9
Type: CAZyme
Location: 9232 - 10050 (-)
Type: CAZyme
Location: 9232 - 10050 (-)
Gene ID: k141_139423_10
Type:
Location: 10537 - 10914 (-)
Type:
Location: 10537 - 10914 (-)
Gene ID: k141_139423_11
Type:
Location: 11007 - 11618 (-)
Type:
Location: 11007 - 11618 (-)
Gene ID: k141_139423_12
Type: CAZyme
Location: 11802 - 12803 (+)
Type: CAZyme
Location: 11802 - 12803 (+)
Gene ID: k141_139423_13
Type: CAZyme
Location: 12916 - 14313 (+)
Type: CAZyme
Location: 12916 - 14313 (+)
Gene ID: k141_139423_14
Type: pfam
Location: 14441 - 15751 (+)
Type: pfam
Location: 14441 - 15751 (+)
Gene ID: k141_139423_15
Type: pfam
Location: 15943 - 16980 (+)
Type: pfam
Location: 15943 - 16980 (+)
Gene ID: k141_139423_16
Type: CAZyme
Location: 17102 - 18238 (-)
Type: CAZyme
Location: 17102 - 18238 (-)
Gene ID: k141_139423_17
Type: TF
Location: 18324 - 19316 (-)
Type: TF
Location: 18324 - 19316 (-)
Gene ID: k141_139423_18
Type: TC
Location: 19459 - 20433 (+)
Type: TC
Location: 19459 - 20433 (+)
Gene ID: k141_139423_19
Type: TC
Location: 20436 - 21386 (+)
Type: TC
Location: 20436 - 21386 (+)
Gene ID: k141_139423_20
Type: STP
Location: 21448 - 22803 (+)
Type: STP
Location: 21448 - 22803 (+)
Gene ID: k141_139423_21
Type: CAZyme
Location: 22885 - 24318 (+)
Type: CAZyme
Location: 22885 - 24318 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Microbacteriaceae
Genus
Clavibacter
Species
Clavibacter michiganensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.