Cluster: CGMR089811_CGC25
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR089811
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_182723 | k141_182723_1 | 1 | 540 | - | 2.A.3.14.1 |
| TC | k141_182723 | k141_182723_2 | 629 | 1294 | - | 2.A.115.2.7 |
| TF | k141_182723 | k141_182723_3 | 1357 | 2820 | + | GntR |
| peptidase | k141_182723 | k141_182723_4 | 2980 | 3963 | + | S01.UNW |
| CAZyme | k141_182723 | k141_182723_5 | 4076 | 6157 | + | GH13_11 |
Gene ID: k141_182723_1
Type: TC
Location: 1 - 540 (-)
Type: TC
Location: 1 - 540 (-)
Gene ID: k141_182723_2
Type: TC
Location: 629 - 1294 (-)
Type: TC
Location: 629 - 1294 (-)
Gene ID: k141_182723_3
Type: TF
Location: 1357 - 2820 (+)
Type: TF
Location: 1357 - 2820 (+)
Gene ID: k141_182723_4
Type: peptidase
Location: 2980 - 3963 (+)
Type: peptidase
Location: 2980 - 3963 (+)
Gene ID: k141_182723_5
Type: CAZyme
Location: 4076 - 6157 (+)
Type: CAZyme
Location: 4076 - 6157 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Microbacteriaceae
Genus
Clavibacter
Species
Clavibacter michiganensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.