Cluster: CGMR089811_CGC2
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 5
- Substrate:
- Genome ID: CGMR089811
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_381741 | k141_381741_4 | 3733 | 5568 | + | GH15 |
| pfam | k141_381741 | k141_381741_5 | 5605 | 6345 | - | DUF2071 |
| TF | k141_381741 | k141_381741_6 | 6342 | 6848 | - | MarR |
| TC | k141_381741 | k141_381741_7 | 6929 | 7750 | + | 2.A.102.6.1 |
| pfam | k141_381741 | k141_381741_8 | 7790 | 8833 | - | Epimerase |
| TC | k141_381741 | k141_381741_9 | 8997 | 10616 | - | 2.A.66.2.23 |
| CAZyme | k141_381741 | k141_381741_10 | 10788 | 11837 | - | GT94 |
| CAZyme | k141_381741 | k141_381741_11 | 11998 | 13932 | + | GT2 | GT2 |
| NULL(UNKNOWN) | k141_381741 | k141_381741_12 | 14132 | 14779 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | k141_381741 | k141_381741_13 | 14818 | 15273 | + | Glyoxalase |
| TC | k141_381741 | k141_381741_14 | 15416 | 16804 | - | 8.A.3.1.2 |
| NULL(UNKNOWN) | k141_381741 | k141_381741_15 | 16801 | 18171 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| sulfatase | k141_381741 | k141_381741_16 | 18336 | 24230 | - | S1_6 |
| CAZyme | k141_381741 | k141_381741_17 | 24280 | 25521 | - | GT4 |
| pfam | k141_381741 | k141_381741_18 | 25518 | 26333 | - | CDP-OH_P_transf |
| CAZyme | k141_381741 | k141_381741_19 | 26330 | 27562 | - | GT4 |
| TC | k141_381741 | k141_381741_20 | 27564 | 29108 | - | 9.B.18.1.2 |
Gene ID: k141_381741_4
Type: CAZyme
Location: 3733 - 5568 (+)
Type: CAZyme
Location: 3733 - 5568 (+)
Gene ID: k141_381741_5
Type: pfam
Location: 5605 - 6345 (-)
Type: pfam
Location: 5605 - 6345 (-)
Gene ID: k141_381741_6
Type: TF
Location: 6342 - 6848 (-)
Type: TF
Location: 6342 - 6848 (-)
Gene ID: k141_381741_7
Type: TC
Location: 6929 - 7750 (+)
Type: TC
Location: 6929 - 7750 (+)
Gene ID: k141_381741_8
Type: pfam
Location: 7790 - 8833 (-)
Type: pfam
Location: 7790 - 8833 (-)
Gene ID: k141_381741_9
Type: TC
Location: 8997 - 10616 (-)
Type: TC
Location: 8997 - 10616 (-)
Gene ID: k141_381741_10
Type: CAZyme
Location: 10788 - 11837 (-)
Type: CAZyme
Location: 10788 - 11837 (-)
Gene ID: k141_381741_11
Type: CAZyme
Location: 11998 - 13932 (+)
Type: CAZyme
Location: 11998 - 13932 (+)
Gene ID: k141_381741_12
Type:
Location: 14132 - 14779 (+)
Type:
Location: 14132 - 14779 (+)
Gene ID: k141_381741_13
Type: STP
Location: 14818 - 15273 (+)
Type: STP
Location: 14818 - 15273 (+)
Gene ID: k141_381741_14
Type: TC
Location: 15416 - 16804 (-)
Type: TC
Location: 15416 - 16804 (-)
Gene ID: k141_381741_15
Type:
Location: 16801 - 18171 (-)
Type:
Location: 16801 - 18171 (-)
Gene ID: k141_381741_16
Type: sulfatase
Location: 18336 - 24230 (-)
Type: sulfatase
Location: 18336 - 24230 (-)
Gene ID: k141_381741_17
Type: CAZyme
Location: 24280 - 25521 (-)
Type: CAZyme
Location: 24280 - 25521 (-)
Gene ID: k141_381741_18
Type: pfam
Location: 25518 - 26333 (-)
Type: pfam
Location: 25518 - 26333 (-)
Gene ID: k141_381741_19
Type: CAZyme
Location: 26330 - 27562 (-)
Type: CAZyme
Location: 26330 - 27562 (-)
Gene ID: k141_381741_20
Type: TC
Location: 27564 - 29108 (-)
Type: TC
Location: 27564 - 29108 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Microbacteriaceae
Genus
Clavibacter
Species
Clavibacter michiganensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.