Cluster: CGMR089811_CGC10
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR089811
- CGC Family ID: CGCFAM_08607
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_232110 | k141_232110_15 | 13487 | 14242 | + | 1.C.113.1.4 |
| TC | k141_232110 | k141_232110_16 | 14267 | 15646 | - | 3.A.1.1.3 |
| TC | k141_232110 | k141_232110_17 | 15708 | 16622 | - | 3.A.1.1.36 |
| TC | k141_232110 | k141_232110_18 | 16619 | 17608 | - | 3.A.1.1.3 |
| NULL(UNKNOWN) | k141_232110 | k141_232110_19 | 17788 | 18132 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_232110 | k141_232110_20 | 18132 | 18998 | - | CE14 |
Gene ID: k141_232110_15
Type: TC
Location: 13487 - 14242 (+)
Type: TC
Location: 13487 - 14242 (+)
Gene ID: k141_232110_16
Type: TC
Location: 14267 - 15646 (-)
Type: TC
Location: 14267 - 15646 (-)
Gene ID: k141_232110_17
Type: TC
Location: 15708 - 16622 (-)
Type: TC
Location: 15708 - 16622 (-)
Gene ID: k141_232110_18
Type: TC
Location: 16619 - 17608 (-)
Type: TC
Location: 16619 - 17608 (-)
Gene ID: k141_232110_19
Type:
Location: 17788 - 18132 (-)
Type:
Location: 17788 - 18132 (-)
Gene ID: k141_232110_20
Type: CAZyme
Location: 18132 - 18998 (-)
Type: CAZyme
Location: 18132 - 18998 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Microbacteriaceae
Genus
Clavibacter
Species
Clavibacter michiganensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.