Cluster: CGMR086188_CGC30
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: CGMR086188
- CGC Family ID: CGCFAM_00008
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_13380 | k141_13380_74 | 81610 | 82572 | - | GT2 |
| pfam | k141_13380 | k141_13380_75 | 82588 | 84474 | - | DUF6020 |
| CAZyme | k141_13380 | k141_13380_76 | 84574 | 86535 | - | GT2 | GT2 |
| TC | k141_13380 | k141_13380_77 | 86605 | 87354 | - | 3.A.1.103.1 |
| TC | k141_13380 | k141_13380_78 | 87364 | 88152 | - | 3.A.1.103.6 |
Gene ID: k141_13380_74
Type: CAZyme
Location: 81610 - 82572 (-)
Type: CAZyme
Location: 81610 - 82572 (-)
Gene ID: k141_13380_75
Type: pfam
Location: 82588 - 84474 (-)
Type: pfam
Location: 82588 - 84474 (-)
Gene ID: k141_13380_76
Type: CAZyme
Location: 84574 - 86535 (-)
Type: CAZyme
Location: 84574 - 86535 (-)
Gene ID: k141_13380_77
Type: TC
Location: 86605 - 87354 (-)
Type: TC
Location: 86605 - 87354 (-)
Gene ID: k141_13380_78
Type: TC
Location: 87364 - 88152 (-)
Type: TC
Location: 87364 - 88152 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Laedolimicola
Species
Laedolimicola faecalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_13380_76 | vegetarian > omnivore | 1.71197 | 0.02059 |
| k141_13380_76 | vegetarian > vegan | 1.34878 | 0.03761 |