Cluster: CGMR085844_CGC9
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR085844
- CGC Family ID: CGCFAM_05417
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_215372 | k141_215372_24 | 22218 | 23132 | + | 8.A.21.2.2 |
| pfam | k141_215372 | k141_215372_25 | 23132 | 23584 | + | NfeD |
| pfam | k141_215372 | k141_215372_26 | 23798 | 24349 | + | Tubulin |
| CAZyme | k141_215372 | k141_215372_27 | 24398 | 25330 | - | GH23 |
| TC | k141_215372 | k141_215372_28 | 25649 | 26869 | + | 2.A.1.11.2 |
| NULL(UNKNOWN) | k141_215372 | k141_215372_29 | 26842 | 27000 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_215372 | k141_215372_30 | 26954 | 29149 | - | 3.A.3.6.12 |
Gene ID: k141_215372_24
Type: TC
Location: 22218 - 23132 (+)
Type: TC
Location: 22218 - 23132 (+)
Gene ID: k141_215372_25
Type: pfam
Location: 23132 - 23584 (+)
Type: pfam
Location: 23132 - 23584 (+)
Gene ID: k141_215372_26
Type: pfam
Location: 23798 - 24349 (+)
Type: pfam
Location: 23798 - 24349 (+)
Gene ID: k141_215372_27
Type: CAZyme
Location: 24398 - 25330 (-)
Type: CAZyme
Location: 24398 - 25330 (-)
Gene ID: k141_215372_28
Type: TC
Location: 25649 - 26869 (+)
Type: TC
Location: 25649 - 26869 (+)
Gene ID: k141_215372_29
Type:
Location: 26842 - 27000 (+)
Type:
Location: 26842 - 27000 (+)
Gene ID: k141_215372_30
Type: TC
Location: 26954 - 29149 (-)
Type: TC
Location: 26954 - 29149 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Thiopseudomonas
Species
Thiopseudomonas sp012728415
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.