Cluster: CGMR085844_CGC2
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR085844
- CGC Family ID: CGCFAM_00359
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_360487 | k141_360487_14 | 12439 | 14013 | + | GH23 |
| TC | k141_360487 | k141_360487_15 | 14182 | 16014 | + | 3.A.1.5.21 |
| TC | k141_360487 | k141_360487_16 | 16014 | 17825 | + | 3.A.1.5.24 |
| TC | k141_360487 | k141_360487_17 | 17826 | 18905 | + | 3.A.1.5.21 |
| TC | k141_360487 | k141_360487_18 | 18910 | 19929 | + | 3.A.1.5.21 |
| TC | k141_360487 | k141_360487_19 | 19907 | 21532 | + | 3.A.1.5.24 |
Gene ID: k141_360487_14
Type: CAZyme
Location: 12439 - 14013 (+)
Type: CAZyme
Location: 12439 - 14013 (+)
Gene ID: k141_360487_15
Type: TC
Location: 14182 - 16014 (+)
Type: TC
Location: 14182 - 16014 (+)
Gene ID: k141_360487_16
Type: TC
Location: 16014 - 17825 (+)
Type: TC
Location: 16014 - 17825 (+)
Gene ID: k141_360487_17
Type: TC
Location: 17826 - 18905 (+)
Type: TC
Location: 17826 - 18905 (+)
Gene ID: k141_360487_18
Type: TC
Location: 18910 - 19929 (+)
Type: TC
Location: 18910 - 19929 (+)
Gene ID: k141_360487_19
Type: TC
Location: 19907 - 21532 (+)
Type: TC
Location: 19907 - 21532 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Thiopseudomonas
Species
Thiopseudomonas sp012728415
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.