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Cluster: CGMR083912_CGC44

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC k141_6270 k141_6270_308 339001 340089 + 3.A.1.11.7
TC k141_6270 k141_6270_309 340102 340911 + 3.A.1.11.7
TC k141_6270 k141_6270_310 340908 341744 + 3.A.1.11.7
TC k141_6270 k141_6270_311 341741 342814 + 3.A.1.11.7
pfam k141_6270 k141_6270_312 343257 345014 + TPP_enzyme_C | Transket_pyr | Transketolase_C | DXP_synthase_N | DXP_synthase_N
TC k141_6270 k141_6270_313 345305 346483 + 2.A.1.68.1
TF k141_6270 k141_6270_314 346612 347499 + HTH_6
pfam k141_6270 k141_6270_315 347535 348356 - Lactamase_B | Lactamase_B_2 | Lactamase_B_3
TC k141_6270 k141_6270_316 348826 349641 + 4.A.1.2.9
TC k141_6270 k141_6270_317 349717 350682 + 4.A.1.2.11
CAZyme k141_6270 k141_6270_318 350694 352118 + GH1
TF k141_6270 k141_6270_319 352243 353127 - HTH_AraC | HTH_AraC
CAZyme k141_6270 k141_6270_320 353260 354366 + GH105
pfam k141_6270 k141_6270_321 354406 354717 + rhaM
TF k141_6270 k141_6270_322 354873 356324 - HTH_AraC
TC k141_6270 k141_6270_323 356321 358090 - 8.A.59.2.1
pfam k141_6270 k141_6270_324 358059 358715 - DUF624
STP k141_6270 k141_6270_325 358980 360290 + SBP_bac_1
TC k141_6270 k141_6270_326 360470 361438 + 3.A.1.1.11
TC k141_6270 k141_6270_327 361442 362275 + 3.A.1.1.11
CAZyme k141_6270 k141_6270_328 362351 363964 + GH28
CAZyme k141_6270 k141_6270_329 364388 365641 + GH28
CAZyme k141_6270 k141_6270_330 365693 367210 + GH142
Gene ID: k141_6270_308
Type: TC
Location: 339001 - 340089 (+)
Gene ID: k141_6270_309
Type: TC
Location: 340102 - 340911 (+)
Gene ID: k141_6270_310
Type: TC
Location: 340908 - 341744 (+)
Gene ID: k141_6270_311
Type: TC
Location: 341741 - 342814 (+)
Gene ID: k141_6270_312
Type: pfam
Location: 343257 - 345014 (+)
Gene ID: k141_6270_313
Type: TC
Location: 345305 - 346483 (+)
Gene ID: k141_6270_314
Type: TF
Location: 346612 - 347499 (+)
Gene ID: k141_6270_315
Type: pfam
Location: 347535 - 348356 (-)
Gene ID: k141_6270_316
Type: TC
Location: 348826 - 349641 (+)
Gene ID: k141_6270_317
Type: TC
Location: 349717 - 350682 (+)
Gene ID: k141_6270_318
Type: CAZyme
Location: 350694 - 352118 (+)
Gene ID: k141_6270_319
Type: TF
Location: 352243 - 353127 (-)
Gene ID: k141_6270_320
Type: CAZyme
Location: 353260 - 354366 (+)
Gene ID: k141_6270_321
Type: pfam
Location: 354406 - 354717 (+)
Gene ID: k141_6270_322
Type: TF
Location: 354873 - 356324 (-)
Gene ID: k141_6270_323
Type: TC
Location: 356321 - 358090 (-)
Gene ID: k141_6270_324
Type: pfam
Location: 358059 - 358715 (-)
Gene ID: k141_6270_325
Type: STP
Location: 358980 - 360290 (+)
Gene ID: k141_6270_326
Type: TC
Location: 360470 - 361438 (+)
Gene ID: k141_6270_327
Type: TC
Location: 361442 - 362275 (+)
Gene ID: k141_6270_328
Type: CAZyme
Location: 362351 - 363964 (+)
Gene ID: k141_6270_329
Type: CAZyme
Location: 364388 - 365641 (+)
Gene ID: k141_6270_330
Type: CAZyme
Location: 365693 - 367210 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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