Cluster: CGMR083912_CGC43
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 6
- Substrate:
- Genome ID: CGMR083912
- CGC Family ID: CGCFAM_05025
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_6270 | k141_6270_236 | 261689 | 263155 | + | GH1 |
| TF | k141_6270 | k141_6270_237 | 263192 | 264598 | + | HTH_AraC | HTH_AraC |
| pfam | k141_6270 | k141_6270_238 | 264961 | 265791 | + | PRD | PRD | CAT_RBD |
| TC | k141_6270 | k141_6270_239 | 265903 | 267753 | + | 4.A.1.2.2 |
| CAZyme | k141_6270 | k141_6270_240 | 267764 | 269191 | + | GH1 |
| pfam | k141_6270 | k141_6270_241 | 269335 | 270234 | + | ROK |
| CAZyme | k141_6270 | k141_6270_242 | 270231 | 272501 | + | GH31_3 |
| CAZyme | k141_6270 | k141_6270_243 | 272502 | 273965 | + | CBM91 | GH43_12 |
| TC | k141_6270 | k141_6270_244 | 274024 | 275820 | - | 8.A.59.2.1 |
| pfam | k141_6270 | k141_6270_245 | 275817 | 276422 | - | DUF624 |
| TC | k141_6270 | k141_6270_246 | 276658 | 277599 | + | 3.A.1.1.29 |
| TC | k141_6270 | k141_6270_247 | 277615 | 278547 | + | 3.A.1.1.29 |
| NULL(UNKNOWN) | k141_6270 | k141_6270_248 | 278569 | 280317 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | k141_6270 | k141_6270_249 | 280460 | 281116 | + | Lipase_GDSL | Lipase_GDSL_2 |
| CAZyme | k141_6270 | k141_6270_250 | 281113 | 282579 | + | GH29 |
| peptidase | k141_6270 | k141_6270_251 | 282590 | 283399 | + | S09.UPW |
| peptidase | k141_6270 | k141_6270_252 | 283482 | 284699 | - | M38.UNW |
| CAZyme | k141_6270 | k141_6270_253 | 284875 | 286986 | + | GH65 |
Gene ID: k141_6270_236
Type: CAZyme
Location: 261689 - 263155 (+)
Type: CAZyme
Location: 261689 - 263155 (+)
Gene ID: k141_6270_237
Type: TF
Location: 263192 - 264598 (+)
Type: TF
Location: 263192 - 264598 (+)
Gene ID: k141_6270_238
Type: pfam
Location: 264961 - 265791 (+)
Type: pfam
Location: 264961 - 265791 (+)
Gene ID: k141_6270_239
Type: TC
Location: 265903 - 267753 (+)
Type: TC
Location: 265903 - 267753 (+)
Gene ID: k141_6270_240
Type: CAZyme
Location: 267764 - 269191 (+)
Type: CAZyme
Location: 267764 - 269191 (+)
Gene ID: k141_6270_241
Type: pfam
Location: 269335 - 270234 (+)
Type: pfam
Location: 269335 - 270234 (+)
Gene ID: k141_6270_242
Type: CAZyme
Location: 270231 - 272501 (+)
Type: CAZyme
Location: 270231 - 272501 (+)
Gene ID: k141_6270_243
Type: CAZyme
Location: 272502 - 273965 (+)
Type: CAZyme
Location: 272502 - 273965 (+)
Gene ID: k141_6270_244
Type: TC
Location: 274024 - 275820 (-)
Type: TC
Location: 274024 - 275820 (-)
Gene ID: k141_6270_245
Type: pfam
Location: 275817 - 276422 (-)
Type: pfam
Location: 275817 - 276422 (-)
Gene ID: k141_6270_246
Type: TC
Location: 276658 - 277599 (+)
Type: TC
Location: 276658 - 277599 (+)
Gene ID: k141_6270_247
Type: TC
Location: 277615 - 278547 (+)
Type: TC
Location: 277615 - 278547 (+)
Gene ID: k141_6270_248
Type:
Location: 278569 - 280317 (+)
Type:
Location: 278569 - 280317 (+)
Gene ID: k141_6270_249
Type: pfam
Location: 280460 - 281116 (+)
Type: pfam
Location: 280460 - 281116 (+)
Gene ID: k141_6270_250
Type: CAZyme
Location: 281113 - 282579 (+)
Type: CAZyme
Location: 281113 - 282579 (+)
Gene ID: k141_6270_251
Type: peptidase
Location: 282590 - 283399 (+)
Type: peptidase
Location: 282590 - 283399 (+)
Gene ID: k141_6270_252
Type: peptidase
Location: 283482 - 284699 (-)
Type: peptidase
Location: 283482 - 284699 (-)
Gene ID: k141_6270_253
Type: CAZyme
Location: 284875 - 286986 (+)
Type: CAZyme
Location: 284875 - 286986 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Enterococcaceae
Genus
Enterococcus_D
Species
Enterococcus_D casseliflavus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.