Cluster: CGMR082428_CGC12
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 5
- Substrate:
- Genome ID: CGMR082428
- CGC Family ID: CGCFAM_00402
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_800 | k141_800_35 | 32602 | 34212 | + | GH13_31 |
| TC | k141_800 | k141_800_36 | 34381 | 36348 | + | 3.A.1.5.19 |
| TC | k141_800 | k141_800_37 | 36507 | 38465 | + | 3.A.1.5.25 |
| pfam | k141_800 | k141_800_38 | 38865 | 40310 | + | DNA_PPF | LytR_cpsA_psr |
| pfam | k141_800 | k141_800_39 | 40312 | 41043 | + | CpsB_CapC |
| TC | k141_800 | k141_800_40 | 41052 | 41744 | + | 8.A.3.2.3 |
| TC | k141_800 | k141_800_41 | 41755 | 42438 | + | 8.A.3.2.2 |
| TC | k141_800 | k141_800_42 | 42460 | 43830 | + | 9.B.18.1.2 |
| CAZyme | k141_800 | k141_800_43 | 43834 | 44577 | + | GT26 |
| pfam | k141_800 | k141_800_44 | 44574 | 45398 | + | LicD |
| CAZyme | k141_800 | k141_800_45 | 45400 | 46281 | + | GT2 |
| CAZyme | k141_800 | k141_800_46 | 46291 | 47388 | + | GT4 |
| NULL(UNKNOWN) | k141_800 | k141_800_47 | 47407 | 48651 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_800 | k141_800_48 | 48659 | 49561 | + | GT2 |
| pfam | k141_800 | k141_800_49 | 49660 | 51594 | + | Hydrolase | HAD_2 |
| TC | k141_800 | k141_800_50 | 51584 | 53029 | + | 2.A.66.2.16 |
Gene ID: k141_800_35
Type: CAZyme
Location: 32602 - 34212 (+)
Type: CAZyme
Location: 32602 - 34212 (+)
Gene ID: k141_800_36
Type: TC
Location: 34381 - 36348 (+)
Type: TC
Location: 34381 - 36348 (+)
Gene ID: k141_800_37
Type: TC
Location: 36507 - 38465 (+)
Type: TC
Location: 36507 - 38465 (+)
Gene ID: k141_800_38
Type: pfam
Location: 38865 - 40310 (+)
Type: pfam
Location: 38865 - 40310 (+)
Gene ID: k141_800_39
Type: pfam
Location: 40312 - 41043 (+)
Type: pfam
Location: 40312 - 41043 (+)
Gene ID: k141_800_40
Type: TC
Location: 41052 - 41744 (+)
Type: TC
Location: 41052 - 41744 (+)
Gene ID: k141_800_41
Type: TC
Location: 41755 - 42438 (+)
Type: TC
Location: 41755 - 42438 (+)
Gene ID: k141_800_42
Type: TC
Location: 42460 - 43830 (+)
Type: TC
Location: 42460 - 43830 (+)
Gene ID: k141_800_43
Type: CAZyme
Location: 43834 - 44577 (+)
Type: CAZyme
Location: 43834 - 44577 (+)
Gene ID: k141_800_44
Type: pfam
Location: 44574 - 45398 (+)
Type: pfam
Location: 44574 - 45398 (+)
Gene ID: k141_800_45
Type: CAZyme
Location: 45400 - 46281 (+)
Type: CAZyme
Location: 45400 - 46281 (+)
Gene ID: k141_800_46
Type: CAZyme
Location: 46291 - 47388 (+)
Type: CAZyme
Location: 46291 - 47388 (+)
Gene ID: k141_800_47
Type:
Location: 47407 - 48651 (+)
Type:
Location: 47407 - 48651 (+)
Gene ID: k141_800_48
Type: CAZyme
Location: 48659 - 49561 (+)
Type: CAZyme
Location: 48659 - 49561 (+)
Gene ID: k141_800_49
Type: pfam
Location: 49660 - 51594 (+)
Type: pfam
Location: 49660 - 51594 (+)
Gene ID: k141_800_50
Type: TC
Location: 51584 - 53029 (+)
Type: TC
Location: 51584 - 53029 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.