Cluster: CGMR081389_CGC8
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: CGMR081389
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_133813 | k141_133813_3 | 1528 | 2820 | - | 2.A.40.7.6 |
| TC | k141_133813 | k141_133813_4 | 2979 | 4076 | + | 2.A.6.2.27 |
| TC | k141_133813 | k141_133813_5 | 4080 | 7142 | + | 2.A.6.2.17 |
| CAZyme | k141_133813 | k141_133813_6 | 7262 | 8422 | + | GT9 |
| CAZyme | k141_133813 | k141_133813_7 | 8423 | 9436 | + | GT9 |
| CAZyme | k141_133813 | k141_133813_8 | 9440 | 10552 | + | GT4 |
Gene ID: k141_133813_3
Type: TC
Location: 1528 - 2820 (-)
Type: TC
Location: 1528 - 2820 (-)
Gene ID: k141_133813_4
Type: TC
Location: 2979 - 4076 (+)
Type: TC
Location: 2979 - 4076 (+)
Gene ID: k141_133813_5
Type: TC
Location: 4080 - 7142 (+)
Type: TC
Location: 4080 - 7142 (+)
Gene ID: k141_133813_6
Type: CAZyme
Location: 7262 - 8422 (+)
Type: CAZyme
Location: 7262 - 8422 (+)
Gene ID: k141_133813_7
Type: CAZyme
Location: 8423 - 9436 (+)
Type: CAZyme
Location: 8423 - 9436 (+)
Gene ID: k141_133813_8
Type: CAZyme
Location: 9440 - 10552 (+)
Type: CAZyme
Location: 9440 - 10552 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Thiopseudomonas
Species
Thiopseudomonas denitrificans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.