Cluster: CGMR081389_CGC13
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR081389
- CGC Family ID: CGCFAM_05417
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_375750 | k141_375750_8 | 5473 | 6387 | + | 8.A.21.2.2 |
| pfam | k141_375750 | k141_375750_9 | 6387 | 6860 | + | NfeD |
| pfam | k141_375750 | k141_375750_10 | 7077 | 7628 | + | Tubulin |
| CAZyme | k141_375750 | k141_375750_11 | 7718 | 8602 | - | GH23 |
| TC | k141_375750 | k141_375750_12 | 8856 | 10076 | + | 2.A.1.11.2 |
| NULL(UNKNOWN) | k141_375750 | k141_375750_13 | 10049 | 10207 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_375750 | k141_375750_14 | 10161 | 12356 | - | 3.A.3.6.4 |
Gene ID: k141_375750_8
Type: TC
Location: 5473 - 6387 (+)
Type: TC
Location: 5473 - 6387 (+)
Gene ID: k141_375750_9
Type: pfam
Location: 6387 - 6860 (+)
Type: pfam
Location: 6387 - 6860 (+)
Gene ID: k141_375750_10
Type: pfam
Location: 7077 - 7628 (+)
Type: pfam
Location: 7077 - 7628 (+)
Gene ID: k141_375750_11
Type: CAZyme
Location: 7718 - 8602 (-)
Type: CAZyme
Location: 7718 - 8602 (-)
Gene ID: k141_375750_12
Type: TC
Location: 8856 - 10076 (+)
Type: TC
Location: 8856 - 10076 (+)
Gene ID: k141_375750_13
Type:
Location: 10049 - 10207 (+)
Type:
Location: 10049 - 10207 (+)
Gene ID: k141_375750_14
Type: TC
Location: 10161 - 12356 (-)
Type: TC
Location: 10161 - 12356 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Thiopseudomonas
Species
Thiopseudomonas denitrificans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.