Cluster: CGMR081364_CGC8
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: CGMR081364
- CGC Family ID: CGCFAM_01451
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_177695 | k141_177695_19 | 18870 | 20756 | + | 9.B.121.1.1 |
| STP | k141_177695 | k141_177695_20 | 20787 | 21215 | - | CBS | CBS |
| CAZyme | k141_177695 | k141_177695_21 | 21175 | 22278 | - | GT2 |
| CAZyme | k141_177695 | k141_177695_22 | 22291 | 23049 | - | GT51 |
| pfam | k141_177695 | k141_177695_23 | 23124 | 24086 | + | HSP33 |
| NULL(UNKNOWN) | k141_177695 | k141_177695_24 | 24191 | 25042 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_177695 | k141_177695_25 | 25458 | 28331 | + | 1.B.14.3.1 |
Gene ID: k141_177695_19
Type: TC
Location: 18870 - 20756 (+)
Type: TC
Location: 18870 - 20756 (+)
Gene ID: k141_177695_20
Type: STP
Location: 20787 - 21215 (-)
Type: STP
Location: 20787 - 21215 (-)
Gene ID: k141_177695_21
Type: CAZyme
Location: 21175 - 22278 (-)
Type: CAZyme
Location: 21175 - 22278 (-)
Gene ID: k141_177695_22
Type: CAZyme
Location: 22291 - 23049 (-)
Type: CAZyme
Location: 22291 - 23049 (-)
Gene ID: k141_177695_23
Type: pfam
Location: 23124 - 24086 (+)
Type: pfam
Location: 23124 - 24086 (+)
Gene ID: k141_177695_24
Type:
Location: 24191 - 25042 (+)
Type:
Location: 24191 - 25042 (+)
Gene ID: k141_177695_25
Type: TC
Location: 25458 - 28331 (+)
Type: TC
Location: 25458 - 28331 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Xanthomonadales
Family
Xanthomonadaceae
Genus
Lysobacter_C
Species
Lysobacter_C avium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.