Cluster: CGMR081364_CGC12
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 4
- Substrate:
- Genome ID: CGMR081364
- CGC Family ID: CGCFAM_00742
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_237165 | k141_237165_105 | 119157 | 120092 | + | GT2 |
| CAZyme | k141_237165 | k141_237165_106 | 120667 | 121809 | + | GT4 |
| CAZyme | k141_237165 | k141_237165_107 | 121800 | 122993 | + | GT4 |
| CAZyme | k141_237165 | k141_237165_108 | 122996 | 124087 | + | GT4 |
| peptidase | k141_237165 | k141_237165_109 | 124075 | 126033 | + | C44.UNW |
| pfam | k141_237165 | k141_237165_110 | 126117 | 127073 | + | EpsG |
| TC | k141_237165 | k141_237165_111 | 127220 | 128353 | + | 9.B.146.1.4 |
| TC | k141_237165 | k141_237165_112 | 128517 | 131144 | + | 1.B.14.8.1 |
Gene ID: k141_237165_105
Type: CAZyme
Location: 119157 - 120092 (+)
Type: CAZyme
Location: 119157 - 120092 (+)
Gene ID: k141_237165_106
Type: CAZyme
Location: 120667 - 121809 (+)
Type: CAZyme
Location: 120667 - 121809 (+)
Gene ID: k141_237165_107
Type: CAZyme
Location: 121800 - 122993 (+)
Type: CAZyme
Location: 121800 - 122993 (+)
Gene ID: k141_237165_108
Type: CAZyme
Location: 122996 - 124087 (+)
Type: CAZyme
Location: 122996 - 124087 (+)
Gene ID: k141_237165_109
Type: peptidase
Location: 124075 - 126033 (+)
Type: peptidase
Location: 124075 - 126033 (+)
Gene ID: k141_237165_110
Type: pfam
Location: 126117 - 127073 (+)
Type: pfam
Location: 126117 - 127073 (+)
Gene ID: k141_237165_111
Type: TC
Location: 127220 - 128353 (+)
Type: TC
Location: 127220 - 128353 (+)
Gene ID: k141_237165_112
Type: TC
Location: 128517 - 131144 (+)
Type: TC
Location: 128517 - 131144 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Xanthomonadales
Family
Xanthomonadaceae
Genus
Lysobacter_C
Species
Lysobacter_C avium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.