Cluster: CGMR081209_CGC16
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: CGMR081209
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_14401 | k141_14401_11 | 10014 | 10352 | - | 4.A.3.1.2 |
| TF | k141_14401 | k141_14401_12 | 10567 | 11571 | - | LacI |
| TC | k141_14401 | k141_14401_13 | 11929 | 13698 | + | 4.A.3.1.1 |
| CAZyme | k141_14401 | k141_14401_14 | 13765 | 15204 | + | GH1 |
| TF | k141_14401 | k141_14401_15 | 15539 | 16549 | - | LacI |
| TC | k141_14401 | k141_14401_16 | 16825 | 18603 | + | 4.A.3.1.1 |
| CAZyme | k141_14401 | k141_14401_17 | 18679 | 20100 | + | GH1 |
Gene ID: k141_14401_11
Type: TC
Location: 10014 - 10352 (-)
Type: TC
Location: 10014 - 10352 (-)
Gene ID: k141_14401_12
Type: TF
Location: 10567 - 11571 (-)
Type: TF
Location: 10567 - 11571 (-)
Gene ID: k141_14401_13
Type: TC
Location: 11929 - 13698 (+)
Type: TC
Location: 11929 - 13698 (+)
Gene ID: k141_14401_14
Type: CAZyme
Location: 13765 - 15204 (+)
Type: CAZyme
Location: 13765 - 15204 (+)
Gene ID: k141_14401_15
Type: TF
Location: 15539 - 16549 (-)
Type: TF
Location: 15539 - 16549 (-)
Gene ID: k141_14401_16
Type: TC
Location: 16825 - 18603 (+)
Type: TC
Location: 16825 - 18603 (+)
Gene ID: k141_14401_17
Type: CAZyme
Location: 18679 - 20100 (+)
Type: CAZyme
Location: 18679 - 20100 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp958445065
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.