Cluster: CGMR081209_CGC1
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR081209
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_28421 | k141_28421_8 | 5376 | 6545 | - | CE9 |
| STP | k141_28421 | k141_28421_9 | 6663 | 7829 | - | SIS | SIS |
| TF | k141_28421 | k141_28421_10 | 7944 | 8675 | - | GntR |
| TC | k141_28421 | k141_28421_11 | 8861 | 9943 | - | 4.A.6.1.4 |
| TC | k141_28421 | k141_28421_12 | 9933 | 10733 | - | 4.A.6.1.4 |
| TC | k141_28421 | k141_28421_13 | 10824 | 11306 | - | 4.A.6.1.4 |
| pfam | k141_28421 | k141_28421_14 | 11343 | 11624 | - | YajC |
| TC | k141_28421 | k141_28421_15 | 11624 | 12067 | - | 4.A.6.1.16 |
Gene ID: k141_28421_8
Type: CAZyme
Location: 5376 - 6545 (-)
Type: CAZyme
Location: 5376 - 6545 (-)
Gene ID: k141_28421_9
Type: STP
Location: 6663 - 7829 (-)
Type: STP
Location: 6663 - 7829 (-)
Gene ID: k141_28421_10
Type: TF
Location: 7944 - 8675 (-)
Type: TF
Location: 7944 - 8675 (-)
Gene ID: k141_28421_11
Type: TC
Location: 8861 - 9943 (-)
Type: TC
Location: 8861 - 9943 (-)
Gene ID: k141_28421_12
Type: TC
Location: 9933 - 10733 (-)
Type: TC
Location: 9933 - 10733 (-)
Gene ID: k141_28421_13
Type: TC
Location: 10824 - 11306 (-)
Type: TC
Location: 10824 - 11306 (-)
Gene ID: k141_28421_14
Type: pfam
Location: 11343 - 11624 (-)
Type: pfam
Location: 11343 - 11624 (-)
Gene ID: k141_28421_15
Type: TC
Location: 11624 - 12067 (-)
Type: TC
Location: 11624 - 12067 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp958445065
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_28421_14 | vegan > omnivore | 1.00618 | 0.01057 |