Cluster: CGMR081144_CGC10
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR081144
- CGC Family ID: CGCFAM_00394
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_1361 | k141_1361_23 | 22854 | 23471 | - | 1.A.30.2.4 |
| TC | k141_1361 | k141_1361_24 | 23508 | 28580 | - | 1.B.14.1.4 |
| TF | k141_1361 | k141_1361_25 | 28805 | 29653 | - | HTH_AraC |
| pfam | k141_1361 | k141_1361_26 | 29902 | 30300 | - | DUF454 |
| TC | k141_1361 | k141_1361_27 | 30300 | 31667 | - | 4.A.7.1.4 |
| TC | k141_1361 | k141_1361_28 | 31689 | 31964 | - | 4.A.7.1.2 |
| TC | k141_1361 | k141_1361_29 | 31980 | 32435 | - | 4.A.7.1.1 |
| NULL(UNKNOWN) | k141_1361 | k141_1361_30 | 32640 | 32816 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | k141_1361 | k141_1361_31 | 32927 | 34396 | - | Fer4 |
| TC | k141_1361 | k141_1361_32 | 34528 | 36483 | - | 3.A.1.120.6 |
| NULL(UNKNOWN) | k141_1361 | k141_1361_33 | 36623 | 36943 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_1361 | k141_1361_34 | 37043 | 38197 | - | GT28 |
| pfam | k141_1361 | k141_1361_35 | 38295 | 38594 | - | Bac_DNA_binding | HU-HIG |
| pfam | k141_1361 | k141_1361_36 | 38647 | 39426 | - | PRA-PH | MazG | MazG |
| TC | k141_1361 | k141_1361_37 | 39410 | 41014 | - | 2.A.66.2.14 |
Gene ID: k141_1361_23
Type: TC
Location: 22854 - 23471 (-)
Type: TC
Location: 22854 - 23471 (-)
Gene ID: k141_1361_24
Type: TC
Location: 23508 - 28580 (-)
Type: TC
Location: 23508 - 28580 (-)
Gene ID: k141_1361_25
Type: TF
Location: 28805 - 29653 (-)
Type: TF
Location: 28805 - 29653 (-)
Gene ID: k141_1361_26
Type: pfam
Location: 29902 - 30300 (-)
Type: pfam
Location: 29902 - 30300 (-)
Gene ID: k141_1361_27
Type: TC
Location: 30300 - 31667 (-)
Type: TC
Location: 30300 - 31667 (-)
Gene ID: k141_1361_28
Type: TC
Location: 31689 - 31964 (-)
Type: TC
Location: 31689 - 31964 (-)
Gene ID: k141_1361_29
Type: TC
Location: 31980 - 32435 (-)
Type: TC
Location: 31980 - 32435 (-)
Gene ID: k141_1361_30
Type:
Location: 32640 - 32816 (-)
Type:
Location: 32640 - 32816 (-)
Gene ID: k141_1361_31
Type: STP
Location: 32927 - 34396 (-)
Type: STP
Location: 32927 - 34396 (-)
Gene ID: k141_1361_32
Type: TC
Location: 34528 - 36483 (-)
Type: TC
Location: 34528 - 36483 (-)
Gene ID: k141_1361_33
Type:
Location: 36623 - 36943 (+)
Type:
Location: 36623 - 36943 (+)
Gene ID: k141_1361_34
Type: CAZyme
Location: 37043 - 38197 (-)
Type: CAZyme
Location: 37043 - 38197 (-)
Gene ID: k141_1361_35
Type: pfam
Location: 38295 - 38594 (-)
Type: pfam
Location: 38295 - 38594 (-)
Gene ID: k141_1361_36
Type: pfam
Location: 38647 - 39426 (-)
Type: pfam
Location: 38647 - 39426 (-)
Gene ID: k141_1361_37
Type: TC
Location: 39410 - 41014 (-)
Type: TC
Location: 39410 - 41014 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Veillonellales
Family
Veillonellaceae
Genus
Veillonella
Species
Veillonella atypica
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.