Cluster: CGMR081026_CGC6
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR081026
- CGC Family ID: CGCFAM_01772
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_225236 | k141_225236_86 | 94461 | 95372 | - | 3.D.4.3.3 |
| NULL(UNKNOWN) | k141_225236 | k141_225236_87 | 95365 | 95547 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_225236 | k141_225236_88 | 95547 | 96206 | - | 3.D.4.3.3 |
| TC | k141_225236 | k141_225236_89 | 96218 | 97705 | - | 3.D.4.3.3 |
| pfam | k141_225236 | k141_225236_90 | 97881 | 98051 | - | FixS |
| TC | k141_225236 | k141_225236_91 | 98054 | 99013 | - | 3.A.3.27.4 |
| pfam | k141_225236 | k141_225236_92 | 99245 | 100075 | + | QueF | QueF_N |
| TC | k141_225236 | k141_225236_93 | 100046 | 101278 | - | 2.A.1.56.1 |
| TC | k141_225236 | k141_225236_94 | 101303 | 101872 | - | 4.F.1.1.8 |
| pfam | k141_225236 | k141_225236_95 | 101912 | 103750 | - | GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_5 | UvrC_RNaseH |
| CAZyme | k141_225236 | k141_225236_96 | 103689 | 104744 | - | GH3 |
| pfam | k141_225236 | k141_225236_97 | 104761 | 105171 | - | ACPS |
| pfam | k141_225236 | k141_225236_98 | 105197 | 105745 | - | RNase_T |
| TC | k141_225236 | k141_225236_99 | 105789 | 107048 | + | 9.B.1.1.2 |
Gene ID: k141_225236_86
Type: TC
Location: 94461 - 95372 (-)
Type: TC
Location: 94461 - 95372 (-)
Gene ID: k141_225236_87
Type:
Location: 95365 - 95547 (-)
Type:
Location: 95365 - 95547 (-)
Gene ID: k141_225236_88
Type: TC
Location: 95547 - 96206 (-)
Type: TC
Location: 95547 - 96206 (-)
Gene ID: k141_225236_89
Type: TC
Location: 96218 - 97705 (-)
Type: TC
Location: 96218 - 97705 (-)
Gene ID: k141_225236_90
Type: pfam
Location: 97881 - 98051 (-)
Type: pfam
Location: 97881 - 98051 (-)
Gene ID: k141_225236_91
Type: TC
Location: 98054 - 99013 (-)
Type: TC
Location: 98054 - 99013 (-)
Gene ID: k141_225236_92
Type: pfam
Location: 99245 - 100075 (+)
Type: pfam
Location: 99245 - 100075 (+)
Gene ID: k141_225236_93
Type: TC
Location: 100046 - 101278 (-)
Type: TC
Location: 100046 - 101278 (-)
Gene ID: k141_225236_94
Type: TC
Location: 101303 - 101872 (-)
Type: TC
Location: 101303 - 101872 (-)
Gene ID: k141_225236_95
Type: pfam
Location: 101912 - 103750 (-)
Type: pfam
Location: 101912 - 103750 (-)
Gene ID: k141_225236_96
Type: CAZyme
Location: 103689 - 104744 (-)
Type: CAZyme
Location: 103689 - 104744 (-)
Gene ID: k141_225236_97
Type: pfam
Location: 104761 - 105171 (-)
Type: pfam
Location: 104761 - 105171 (-)
Gene ID: k141_225236_98
Type: pfam
Location: 105197 - 105745 (-)
Type: pfam
Location: 105197 - 105745 (-)
Gene ID: k141_225236_99
Type: TC
Location: 105789 - 107048 (+)
Type: TC
Location: 105789 - 107048 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Paenalcaligenes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.