Cluster: CGMR080803_CGC5
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR080803
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_164388 | k141_164388_62 | 74315 | 75709 | + | AA4 |
| sulfatase | k141_164388 | k141_164388_63 | 76254 | 76919 | + | S1_6 |
| pfam | k141_164388 | k141_164388_64 | 76919 | 77731 | + | Fapy_DNA_glyco | zf-FPG_IleRS | H2TH |
| TC | k141_164388 | k141_164388_65 | 78372 | 80228 | + | 2.A.58.2.4 |
| STP | k141_164388 | k141_164388_66 | 80277 | 80528 | - | Fer4 |
| pfam | k141_164388 | k141_164388_67 | 80573 | 81052 | - | CTP_transf_like | Citrate_ly_lig |
| TC | k141_164388 | k141_164388_68 | 81119 | 82339 | - | 2.A.1.2.21 |
| TC | k141_164388 | k141_164388_69 | 82607 | 83956 | - | 1.B.25.1.1 |
| pfam | k141_164388 | k141_164388_70 | 84016 | 84444 | - | Copper-bind |
| TC | k141_164388 | k141_164388_71 | 84463 | 85218 | - | 3.A.1.14.22 |
| TC | k141_164388 | k141_164388_72 | 85215 | 86210 | - | 3.A.1.14.9 |
| STP | k141_164388 | k141_164388_73 | 86266 | 87282 | - | Peripla_BP_2 |
| TF | k141_164388 | k141_164388_74 | 87437 | 88366 | + | HTH_1 |
| TC | k141_164388 | k141_164388_75 | 88441 | 88638 | - | 1.B.14.1.5 |
| TC | k141_164388 | k141_164388_76 | 88663 | 90717 | - | 1.B.14.1.5 |
Gene ID: k141_164388_62
Type: CAZyme
Location: 74315 - 75709 (+)
Type: CAZyme
Location: 74315 - 75709 (+)
Gene ID: k141_164388_63
Type: sulfatase
Location: 76254 - 76919 (+)
Type: sulfatase
Location: 76254 - 76919 (+)
Gene ID: k141_164388_64
Type: pfam
Location: 76919 - 77731 (+)
Type: pfam
Location: 76919 - 77731 (+)
Gene ID: k141_164388_65
Type: TC
Location: 78372 - 80228 (+)
Type: TC
Location: 78372 - 80228 (+)
Gene ID: k141_164388_66
Type: STP
Location: 80277 - 80528 (-)
Type: STP
Location: 80277 - 80528 (-)
Gene ID: k141_164388_67
Type: pfam
Location: 80573 - 81052 (-)
Type: pfam
Location: 80573 - 81052 (-)
Gene ID: k141_164388_68
Type: TC
Location: 81119 - 82339 (-)
Type: TC
Location: 81119 - 82339 (-)
Gene ID: k141_164388_69
Type: TC
Location: 82607 - 83956 (-)
Type: TC
Location: 82607 - 83956 (-)
Gene ID: k141_164388_70
Type: pfam
Location: 84016 - 84444 (-)
Type: pfam
Location: 84016 - 84444 (-)
Gene ID: k141_164388_71
Type: TC
Location: 84463 - 85218 (-)
Type: TC
Location: 84463 - 85218 (-)
Gene ID: k141_164388_72
Type: TC
Location: 85215 - 86210 (-)
Type: TC
Location: 85215 - 86210 (-)
Gene ID: k141_164388_73
Type: STP
Location: 86266 - 87282 (-)
Type: STP
Location: 86266 - 87282 (-)
Gene ID: k141_164388_74
Type: TF
Location: 87437 - 88366 (+)
Type: TF
Location: 87437 - 88366 (+)
Gene ID: k141_164388_75
Type: TC
Location: 88441 - 88638 (-)
Type: TC
Location: 88441 - 88638 (-)
Gene ID: k141_164388_76
Type: TC
Location: 88663 - 90717 (-)
Type: TC
Location: 88663 - 90717 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Thiopseudomonas
Species
Thiopseudomonas sp018384595
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.