Cluster: CGMR080803_CGC12
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR080803
- CGC Family ID: CGCFAM_00245
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_227290 | k141_227290_36 | 37435 | 38412 | + | 3.A.1.34.1 |
| TC | k141_227290 | k141_227290_37 | 38550 | 39440 | + | 3.A.1.34.1 |
| TC | k141_227290 | k141_227290_38 | 39442 | 40236 | + | 3.A.1.34.1 |
| pfam | k141_227290 | k141_227290_39 | 40266 | 41105 | + | NTP_transferase |
| CAZyme | k141_227290 | k141_227290_40 | 41291 | 41746 | - | GT2 |
Gene ID: k141_227290_36
Type: TC
Location: 37435 - 38412 (+)
Type: TC
Location: 37435 - 38412 (+)
Gene ID: k141_227290_37
Type: TC
Location: 38550 - 39440 (+)
Type: TC
Location: 38550 - 39440 (+)
Gene ID: k141_227290_38
Type: TC
Location: 39442 - 40236 (+)
Type: TC
Location: 39442 - 40236 (+)
Gene ID: k141_227290_39
Type: pfam
Location: 40266 - 41105 (+)
Type: pfam
Location: 40266 - 41105 (+)
Gene ID: k141_227290_40
Type: CAZyme
Location: 41291 - 41746 (-)
Type: CAZyme
Location: 41291 - 41746 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Thiopseudomonas
Species
Thiopseudomonas sp018384595
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.