Cluster: CGMR080761_CGC19
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 4
- Substrate:
- Genome ID: CGMR080761
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_56800 | k141_56800_4 | 5181 | 6863 | - | GH13_31 |
| TC | k141_56800 | k141_56800_5 | 7324 | 8730 | + | 2.A.35.1.3 |
| pfam | k141_56800 | k141_56800_6 | 8849 | 9763 | + | ADH_N |
| pfam | k141_56800 | k141_56800_7 | 9936 | 10799 | + | ROK |
| CAZyme | k141_56800 | k141_56800_8 | 11205 | 13475 | - | GH65 |
| TC | k141_56800 | k141_56800_9 | 13575 | 14678 | - | 3.A.1.1.20 |
| NULL(UNKNOWN) | k141_56800 | k141_56800_10 | 14700 | 15380 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_56800 | k141_56800_11 | 15412 | 16224 | - | 3.A.1.1.45 |
| TC | k141_56800 | k141_56800_12 | 16224 | 17084 | - | 3.A.1.1.45 |
| STP | k141_56800 | k141_56800_13 | 17134 | 18429 | - | SBP_bac_1 |
| CAZyme | k141_56800 | k141_56800_14 | 18731 | 20014 | - | GH13 |
| CAZyme | k141_56800 | k141_56800_15 | 20007 | 21683 | - | GH13_31 |
| TF | k141_56800 | k141_56800_16 | 22099 | 23058 | - | LacI |
| TF | k141_56800 | k141_56800_17 | 23093 | 24112 | - | LacI |
| TC | k141_56800 | k141_56800_18 | 24456 | 24974 | + | 3.A.1.26.10 |
| TC | k141_56800 | k141_56800_19 | 25085 | 26596 | - | 3.D.10.1.6 |
Gene ID: k141_56800_4
Type: CAZyme
Location: 5181 - 6863 (-)
Type: CAZyme
Location: 5181 - 6863 (-)
Gene ID: k141_56800_5
Type: TC
Location: 7324 - 8730 (+)
Type: TC
Location: 7324 - 8730 (+)
Gene ID: k141_56800_6
Type: pfam
Location: 8849 - 9763 (+)
Type: pfam
Location: 8849 - 9763 (+)
Gene ID: k141_56800_7
Type: pfam
Location: 9936 - 10799 (+)
Type: pfam
Location: 9936 - 10799 (+)
Gene ID: k141_56800_8
Type: CAZyme
Location: 11205 - 13475 (-)
Type: CAZyme
Location: 11205 - 13475 (-)
Gene ID: k141_56800_9
Type: TC
Location: 13575 - 14678 (-)
Type: TC
Location: 13575 - 14678 (-)
Gene ID: k141_56800_10
Type:
Location: 14700 - 15380 (-)
Type:
Location: 14700 - 15380 (-)
Gene ID: k141_56800_11
Type: TC
Location: 15412 - 16224 (-)
Type: TC
Location: 15412 - 16224 (-)
Gene ID: k141_56800_12
Type: TC
Location: 16224 - 17084 (-)
Type: TC
Location: 16224 - 17084 (-)
Gene ID: k141_56800_13
Type: STP
Location: 17134 - 18429 (-)
Type: STP
Location: 17134 - 18429 (-)
Gene ID: k141_56800_14
Type: CAZyme
Location: 18731 - 20014 (-)
Type: CAZyme
Location: 18731 - 20014 (-)
Gene ID: k141_56800_15
Type: CAZyme
Location: 20007 - 21683 (-)
Type: CAZyme
Location: 20007 - 21683 (-)
Gene ID: k141_56800_16
Type: TF
Location: 22099 - 23058 (-)
Type: TF
Location: 22099 - 23058 (-)
Gene ID: k141_56800_17
Type: TF
Location: 23093 - 24112 (-)
Type: TF
Location: 23093 - 24112 (-)
Gene ID: k141_56800_18
Type: TC
Location: 24456 - 24974 (+)
Type: TC
Location: 24456 - 24974 (+)
Gene ID: k141_56800_19
Type: TC
Location: 25085 - 26596 (-)
Type: TC
Location: 25085 - 26596 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lactiplantibacillus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.