Cluster: CGMR079934_CGC79
🧬 Cluster Details
- Gene Count: 28
- CAZyme Count: 13
- Substrate: arabinogalactan
- Genome ID: CGMR079934
- CGC Family ID: CGCFAM_04144
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_10233 | k141_10233_39 | 44579 | 45568 | - | GT2 |
| pfam | k141_10233 | k141_10233_40 | 45710 | 46909 | - | Acetate_kinase |
| pfam | k141_10233 | k141_10233_41 | 46938 | 47957 | - | PTA_PTB |
| TC | k141_10233 | k141_10233_42 | 48154 | 48579 | + | 1.E.14.1.13 |
| TC | k141_10233 | k141_10233_43 | 48560 | 49255 | + | 2.A.122.1.1 |
| pfam | k141_10233 | k141_10233_44 | 49310 | 50227 | + | LPG_synthase_C |
| pfam | k141_10233 | k141_10233_45 | 50239 | 51255 | + | Acetyltransf_1 | Acetyltransf_9 |
| CAZyme | k141_10233 | k141_10233_46 | 51280 | 52419 | - | GH105 |
| CAZyme | k141_10233 | k141_10233_47 | 52424 | 53722 | - | PL42 |
| CAZyme | k141_10233 | k141_10233_48 | 53732 | 54763 | - | GH43_24 |
| CAZyme | k141_10233 | k141_10233_49 | 54961 | 56856 | - | GH16_3 | GH43_24 |
| pfam | k141_10233 | k141_10233_50 | 57243 | 58121 | - | BT_3987-like_N | BT_3044-like_C | DUF4973 |
| pfam | k141_10233 | k141_10233_51 | 58158 | 60116 | - | SusD_RagB | SusD-like_3 |
| TC | k141_10233 | k141_10233_52 | 60131 | 63199 | - | 1.B.14.6.1 |
| pfam | k141_10233 | k141_10233_53 | 63218 | 64540 | - | TIG |
| TF | k141_10233 | k141_10233_54 | 65062 | 69216 | - | HTH_AraC |
| CAZyme | k141_10233 | k141_10233_55 | 69456 | 71474 | - | GH154 |
| pfam | k141_10233 | k141_10233_56 | 71471 | 73174 | - | BNR_4 |
| CAZyme | k141_10233 | k141_10233_57 | 73379 | 74380 | + | GH43_34 |
| CAZyme | k141_10233 | k141_10233_58 | 74418 | 76424 | + | GH127 |
| pfam | k141_10233 | k141_10233_59 | 76583 | 77434 | - | TonB_C | DUF4488 |
| CAZyme | k141_10233 | k141_10233_60 | 77535 | 79481 | - | GH97 |
| NULL(UNKNOWN) | k141_10233 | k141_10233_61 | 79712 | 80143 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | k141_10233 | k141_10233_62 | 80208 | 82352 | + | HTH_AraC |
| CAZyme | k141_10233 | k141_10233_63 | 82443 | 84911 | + | GH31_4 |
| CAZyme | k141_10233 | k141_10233_64 | 85566 | 88034 | - | GH51_2 |
| CAZyme | k141_10233 | k141_10233_65 | 88179 | 89144 | - | GH43_19 |
| CAZyme | k141_10233 | k141_10233_66 | 89158 | 91500 | - | GH35 |
Gene ID: k141_10233_39
Type: CAZyme
Location: 44579 - 45568 (-)
Type: CAZyme
Location: 44579 - 45568 (-)
Gene ID: k141_10233_40
Type: pfam
Location: 45710 - 46909 (-)
Type: pfam
Location: 45710 - 46909 (-)
Gene ID: k141_10233_41
Type: pfam
Location: 46938 - 47957 (-)
Type: pfam
Location: 46938 - 47957 (-)
Gene ID: k141_10233_42
Type: TC
Location: 48154 - 48579 (+)
Type: TC
Location: 48154 - 48579 (+)
Gene ID: k141_10233_43
Type: TC
Location: 48560 - 49255 (+)
Type: TC
Location: 48560 - 49255 (+)
Gene ID: k141_10233_44
Type: pfam
Location: 49310 - 50227 (+)
Type: pfam
Location: 49310 - 50227 (+)
Gene ID: k141_10233_45
Type: pfam
Location: 50239 - 51255 (+)
Type: pfam
Location: 50239 - 51255 (+)
Gene ID: k141_10233_46
Type: CAZyme
Location: 51280 - 52419 (-)
Type: CAZyme
Location: 51280 - 52419 (-)
Gene ID: k141_10233_47
Type: CAZyme
Location: 52424 - 53722 (-)
Type: CAZyme
Location: 52424 - 53722 (-)
Gene ID: k141_10233_48
Type: CAZyme
Location: 53732 - 54763 (-)
Type: CAZyme
Location: 53732 - 54763 (-)
Gene ID: k141_10233_49
Type: CAZyme
Location: 54961 - 56856 (-)
Type: CAZyme
Location: 54961 - 56856 (-)
Gene ID: k141_10233_50
Type: pfam
Location: 57243 - 58121 (-)
Type: pfam
Location: 57243 - 58121 (-)
Gene ID: k141_10233_51
Type: pfam
Location: 58158 - 60116 (-)
Type: pfam
Location: 58158 - 60116 (-)
Gene ID: k141_10233_52
Type: TC
Location: 60131 - 63199 (-)
Type: TC
Location: 60131 - 63199 (-)
Gene ID: k141_10233_53
Type: pfam
Location: 63218 - 64540 (-)
Type: pfam
Location: 63218 - 64540 (-)
Gene ID: k141_10233_54
Type: TF
Location: 65062 - 69216 (-)
Type: TF
Location: 65062 - 69216 (-)
Gene ID: k141_10233_55
Type: CAZyme
Location: 69456 - 71474 (-)
Type: CAZyme
Location: 69456 - 71474 (-)
Gene ID: k141_10233_56
Type: pfam
Location: 71471 - 73174 (-)
Type: pfam
Location: 71471 - 73174 (-)
Gene ID: k141_10233_57
Type: CAZyme
Location: 73379 - 74380 (+)
Type: CAZyme
Location: 73379 - 74380 (+)
Gene ID: k141_10233_58
Type: CAZyme
Location: 74418 - 76424 (+)
Type: CAZyme
Location: 74418 - 76424 (+)
Gene ID: k141_10233_59
Type: pfam
Location: 76583 - 77434 (-)
Type: pfam
Location: 76583 - 77434 (-)
Gene ID: k141_10233_60
Type: CAZyme
Location: 77535 - 79481 (-)
Type: CAZyme
Location: 77535 - 79481 (-)
Gene ID: k141_10233_61
Type:
Location: 79712 - 80143 (+)
Type:
Location: 79712 - 80143 (+)
Gene ID: k141_10233_62
Type: TF
Location: 80208 - 82352 (+)
Type: TF
Location: 80208 - 82352 (+)
Gene ID: k141_10233_63
Type: CAZyme
Location: 82443 - 84911 (+)
Type: CAZyme
Location: 82443 - 84911 (+)
Gene ID: k141_10233_64
Type: CAZyme
Location: 85566 - 88034 (-)
Type: CAZyme
Location: 85566 - 88034 (-)
Gene ID: k141_10233_65
Type: CAZyme
Location: 88179 - 89144 (-)
Type: CAZyme
Location: 88179 - 89144 (-)
Gene ID: k141_10233_66
Type: CAZyme
Location: 89158 - 91500 (-)
Type: CAZyme
Location: 89158 - 91500 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides faecis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.