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Cluster: CGMR079934_CGC38

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme k141_28340 k141_28340_29 32816 33970 - GH18
TC k141_28340 k141_28340_30 33983 35611 - 8.A.46.2.2
TC k141_28340 k141_28340_31 35619 38945 - 1.B.14.6.13
STP k141_28340 k141_28340_32 39112 40098 - FecR
STP k141_28340 k141_28340_33 40145 40696 - Sigma70_r2 | Sigma70_r4_2
CAZyme k141_28340 k141_28340_34 41613 44453 + GH3
sulfatase k141_28340 k141_28340_35 44479 45630 + S1_8
pfam k141_28340 k141_28340_36 45939 49220 - TPR_8 | TPR_16 | DUF5107
TC k141_28340 k141_28340_37 49234 50661 - 2.A.1.1.3
TF k141_28340 k141_28340_38 50779 51666 + HTH_AraC | HTH_AraC
CAZyme k141_28340 k141_28340_39 51729 53942 - GH84
CAZyme k141_28340 k141_28340_40 54148 55788 + GH20
Gene ID: k141_28340_29
Type: CAZyme
Location: 32816 - 33970 (-)
Gene ID: k141_28340_30
Type: TC
Location: 33983 - 35611 (-)
Gene ID: k141_28340_31
Type: TC
Location: 35619 - 38945 (-)
Gene ID: k141_28340_32
Type: STP
Location: 39112 - 40098 (-)
Gene ID: k141_28340_33
Type: STP
Location: 40145 - 40696 (-)
Gene ID: k141_28340_34
Type: CAZyme
Location: 41613 - 44453 (+)
Gene ID: k141_28340_35
Type: sulfatase
Location: 44479 - 45630 (+)
Gene ID: k141_28340_36
Type: pfam
Location: 45939 - 49220 (-)
Gene ID: k141_28340_37
Type: TC
Location: 49234 - 50661 (-)
Gene ID: k141_28340_38
Type: TF
Location: 50779 - 51666 (+)
Gene ID: k141_28340_39
Type: CAZyme
Location: 51729 - 53942 (-)
Gene ID: k141_28340_40
Type: CAZyme
Location: 54148 - 55788 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
k141_28340_36 vegan > omnivore 1.03074 0.01667

🧭 Explore Read Mapping of CGC

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