Cluster: CGMR079934_CGC16
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 5
- Substrate: pectin
- Genome ID: CGMR079934
- CGC Family ID: CGCFAM_00136
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_13962 | k141_13962_139 | 212111 | 213688 | - | GH28 |
| pfam | k141_13962 | k141_13962_140 | 213894 | 215969 | - | SusD_RagB | SusD-like_3 |
| TC | k141_13962 | k141_13962_141 | 215984 | 219391 | - | 1.B.14.6.1 |
| NULL(UNKNOWN) | k141_13962 | k141_13962_142 | 219439 | 221103 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_13962 | k141_13962_143 | 221138 | 222772 | - | PL1_2 |
| CAZyme | k141_13962 | k141_13962_144 | 223049 | 225628 | - | GH95 |
| TF | k141_13962 | k141_13962_145 | 225737 | 226549 | - | LytTR |
| TC | k141_13962 | k141_13962_146 | 226553 | 227347 | - | 9.B.116.3.2 |
| CAZyme | k141_13962 | k141_13962_147 | 227621 | 229192 | + | PL1_2 |
| CAZyme | k141_13962 | k141_13962_148 | 229199 | 230692 | + | PL1_2 |
| TC | k141_13962 | k141_13962_149 | 230912 | 234133 | + | 1.B.14.6.1 |
Gene ID: k141_13962_139
Type: CAZyme
Location: 212111 - 213688 (-)
Type: CAZyme
Location: 212111 - 213688 (-)
Gene ID: k141_13962_140
Type: pfam
Location: 213894 - 215969 (-)
Type: pfam
Location: 213894 - 215969 (-)
Gene ID: k141_13962_141
Type: TC
Location: 215984 - 219391 (-)
Type: TC
Location: 215984 - 219391 (-)
Gene ID: k141_13962_142
Type:
Location: 219439 - 221103 (-)
Type:
Location: 219439 - 221103 (-)
Gene ID: k141_13962_143
Type: CAZyme
Location: 221138 - 222772 (-)
Type: CAZyme
Location: 221138 - 222772 (-)
Gene ID: k141_13962_144
Type: CAZyme
Location: 223049 - 225628 (-)
Type: CAZyme
Location: 223049 - 225628 (-)
Gene ID: k141_13962_145
Type: TF
Location: 225737 - 226549 (-)
Type: TF
Location: 225737 - 226549 (-)
Gene ID: k141_13962_146
Type: TC
Location: 226553 - 227347 (-)
Type: TC
Location: 226553 - 227347 (-)
Gene ID: k141_13962_147
Type: CAZyme
Location: 227621 - 229192 (+)
Type: CAZyme
Location: 227621 - 229192 (+)
Gene ID: k141_13962_148
Type: CAZyme
Location: 229199 - 230692 (+)
Type: CAZyme
Location: 229199 - 230692 (+)
Gene ID: k141_13962_149
Type: TC
Location: 230912 - 234133 (+)
Type: TC
Location: 230912 - 234133 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides faecis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.