Cluster: CGMR079671_CGC16
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 3
- Substrate:
- Genome ID: CGMR079671
- CGC Family ID: CGCFAM_00008
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_89823 | k141_89823_42 | 44841 | 45608 | - | 3.A.1.103.1 |
| TC | k141_89823 | k141_89823_43 | 45620 | 46465 | - | 3.A.1.103.6 |
| CAZyme | k141_89823 | k141_89823_44 | 46612 | 47565 | + | GT81 |
| pfam | k141_89823 | k141_89823_45 | 47572 | 48660 | + | Acyl_transf_3 |
| CAZyme | k141_89823 | k141_89823_46 | 48743 | 49882 | - | GT2 |
| pfam | k141_89823 | k141_89823_47 | 49965 | 51968 | - | DUF6541 |
| pfam | k141_89823 | k141_89823_48 | 52136 | 52498 | - | DUF2304 |
| CAZyme | k141_89823 | k141_89823_49 | 52504 | 53196 | - | GT2 |
Gene ID: k141_89823_42
Type: TC
Location: 44841 - 45608 (-)
Type: TC
Location: 44841 - 45608 (-)
Gene ID: k141_89823_43
Type: TC
Location: 45620 - 46465 (-)
Type: TC
Location: 45620 - 46465 (-)
Gene ID: k141_89823_44
Type: CAZyme
Location: 46612 - 47565 (+)
Type: CAZyme
Location: 46612 - 47565 (+)
Gene ID: k141_89823_45
Type: pfam
Location: 47572 - 48660 (+)
Type: pfam
Location: 47572 - 48660 (+)
Gene ID: k141_89823_46
Type: CAZyme
Location: 48743 - 49882 (-)
Type: CAZyme
Location: 48743 - 49882 (-)
Gene ID: k141_89823_47
Type: pfam
Location: 49965 - 51968 (-)
Type: pfam
Location: 49965 - 51968 (-)
Gene ID: k141_89823_48
Type: pfam
Location: 52136 - 52498 (-)
Type: pfam
Location: 52136 - 52498 (-)
Gene ID: k141_89823_49
Type: CAZyme
Location: 52504 - 53196 (-)
Type: CAZyme
Location: 52504 - 53196 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900548255
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.