Cluster: CGMR078421_CGC46
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 4
- Substrate:
- Genome ID: CGMR078421
- CGC Family ID: CGCFAM_00011
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_28266 | k141_28266_12 | 13183 | 15006 | - | GT2 |
| TC | k141_28266 | k141_28266_13 | 15044 | 15817 | - | 3.A.1.103.1 |
| TC | k141_28266 | k141_28266_14 | 15830 | 16621 | - | 3.A.1.103.4 |
| CAZyme | k141_28266 | k141_28266_15 | 16624 | 17628 | - | GT2 |
| CAZyme | k141_28266 | k141_28266_16 | 17763 | 19061 | - | GT2 |
| CAZyme | k141_28266 | k141_28266_17 | 19081 | 19818 | - | GT2 |
| TC | k141_28266 | k141_28266_18 | 19815 | 21203 | - | 9.B.18.1.3 |
Gene ID: k141_28266_12
Type: CAZyme
Location: 13183 - 15006 (-)
Type: CAZyme
Location: 13183 - 15006 (-)
Gene ID: k141_28266_13
Type: TC
Location: 15044 - 15817 (-)
Type: TC
Location: 15044 - 15817 (-)
Gene ID: k141_28266_14
Type: TC
Location: 15830 - 16621 (-)
Type: TC
Location: 15830 - 16621 (-)
Gene ID: k141_28266_15
Type: CAZyme
Location: 16624 - 17628 (-)
Type: CAZyme
Location: 16624 - 17628 (-)
Gene ID: k141_28266_16
Type: CAZyme
Location: 17763 - 19061 (-)
Type: CAZyme
Location: 17763 - 19061 (-)
Gene ID: k141_28266_17
Type: CAZyme
Location: 19081 - 19818 (-)
Type: CAZyme
Location: 19081 - 19818 (-)
Gene ID: k141_28266_18
Type: TC
Location: 19815 - 21203 (-)
Type: TC
Location: 19815 - 21203 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Limivivens
Species
Limivivens sp900066135
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_28266_17 | vegan > omnivore | 1.01566 | 0.02872 |
| k141_28266_18 | vegan > omnivore | 1.15669 | 0.02171 |