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Cluster: CGMR078421_CGC44

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme k141_123608 k141_123608_3 1939 4533 + GH3
TC k141_123608 k141_123608_4 4668 5687 + 3.A.1.24.2
TC k141_123608 k141_123608_5 5677 6336 + 3.A.1.24.5
TC k141_123608 k141_123608_6 6371 7315 + 3.A.1.24.5
TC k141_123608 k141_123608_7 7693 9072 + 2.A.66.1.32
CAZyme k141_123608 k141_123608_8 9295 11703 + GH3
CAZyme k141_123608 k141_123608_9 12173 13162 + GH130_2
CAZyme k141_123608 k141_123608_10 13245 16382 + GH38
TF k141_123608 k141_123608_11 16464 17486 - LacI
CAZyme k141_123608 k141_123608_12 17483 18559 - CBM9
CAZyme k141_123608 k141_123608_13 18977 21256 + GH3
TC k141_123608 k141_123608_14 21726 22661 + 3.A.1.1.10
TC k141_123608 k141_123608_15 22675 23604 + 3.A.1.1.29
STP k141_123608 k141_123608_16 23727 25391 + SBP_bac_1
CAZyme k141_123608 k141_123608_17 25794 27083 + GH29
CAZyme k141_123608 k141_123608_18 27181 28194 + GH18
TC k141_123608 k141_123608_19 28473 29849 - 2.A.66.1.33
peptidase k141_123608 k141_123608_20 30498 31811 + M18.UPW
TF k141_123608 k141_123608_21 32126 32518 + GntR
TC k141_123608 k141_123608_22 32545 33426 + 3.A.1.132.6
NULL(UNKNOWN) k141_123608 k141_123608_23 33428 34102 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) k141_123608 k141_123608_24 34116 34844 + NULL(UNKNOWN)
[View Structural Homologs]
TC k141_123608 k141_123608_25 34857 35774 + 3.A.1.147.2
Gene ID: k141_123608_3
Type: CAZyme
Location: 1939 - 4533 (+)
Gene ID: k141_123608_4
Type: TC
Location: 4668 - 5687 (+)
Gene ID: k141_123608_5
Type: TC
Location: 5677 - 6336 (+)
Gene ID: k141_123608_6
Type: TC
Location: 6371 - 7315 (+)
Gene ID: k141_123608_7
Type: TC
Location: 7693 - 9072 (+)
Gene ID: k141_123608_8
Type: CAZyme
Location: 9295 - 11703 (+)
Gene ID: k141_123608_9
Type: CAZyme
Location: 12173 - 13162 (+)
Gene ID: k141_123608_10
Type: CAZyme
Location: 13245 - 16382 (+)
Gene ID: k141_123608_11
Type: TF
Location: 16464 - 17486 (-)
Gene ID: k141_123608_12
Type: CAZyme
Location: 17483 - 18559 (-)
Gene ID: k141_123608_13
Type: CAZyme
Location: 18977 - 21256 (+)
Gene ID: k141_123608_14
Type: TC
Location: 21726 - 22661 (+)
Gene ID: k141_123608_15
Type: TC
Location: 22675 - 23604 (+)
Gene ID: k141_123608_16
Type: STP
Location: 23727 - 25391 (+)
Gene ID: k141_123608_17
Type: CAZyme
Location: 25794 - 27083 (+)
Gene ID: k141_123608_18
Type: CAZyme
Location: 27181 - 28194 (+)
Gene ID: k141_123608_19
Type: TC
Location: 28473 - 29849 (-)
Gene ID: k141_123608_20
Type: peptidase
Location: 30498 - 31811 (+)
Gene ID: k141_123608_21
Type: TF
Location: 32126 - 32518 (+)
Gene ID: k141_123608_22
Type: TC
Location: 32545 - 33426 (+)
Gene ID: k141_123608_23
Type:
Location: 33428 - 34102 (+)
Gene ID: k141_123608_24
Type:
Location: 34116 - 34844 (+)
Gene ID: k141_123608_25
Type: TC
Location: 34857 - 35774 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
k141_123608_6 vegan > omnivore 1.15634 0.02271

🧭 Explore Read Mapping of CGC

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