Cluster: CGMR078421_CGC39
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 7
- Substrate:
- Genome ID: CGMR078421
- CGC Family ID: CGCFAM_02276
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_11862 | k141_11862_21 | 20400 | 22709 | - | GH95 |
| CAZyme | k141_11862 | k141_11862_22 | 22847 | 25414 | - | GH95 |
| TC | k141_11862 | k141_11862_23 | 25404 | 26939 | - | 3.A.1.1.29 |
| TC | k141_11862 | k141_11862_24 | 27015 | 27914 | - | 3.A.1.1.29 |
| TC | k141_11862 | k141_11862_25 | 27927 | 28871 | - | 3.A.1.1.29 |
| CAZyme | k141_11862 | k141_11862_26 | 29154 | 31517 | - | GH31_4 |
| CAZyme | k141_11862 | k141_11862_27 | 31552 | 32985 | - | GH29 |
| NULL(UNKNOWN) | k141_11862 | k141_11862_28 | 33003 | 33710 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_11862 | k141_11862_29 | 33718 | 35148 | - | GH43_35 |
| CAZyme | k141_11862 | k141_11862_30 | 35175 | 37472 | - | GH95 |
| NULL(UNKNOWN) | k141_11862 | k141_11862_31 | 37549 | 39273 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_11862 | k141_11862_32 | 39347 | 40237 | - | 3.A.1.1.10 |
| TC | k141_11862 | k141_11862_33 | 40254 | 41192 | - | 3.A.1.1.29 |
| TF | k141_11862 | k141_11862_34 | 41367 | 43688 | - | HTH_AraC | HTH_AraC |
| CAZyme | k141_11862 | k141_11862_35 | 43714 | 46170 | - | GH2 |
Gene ID: k141_11862_21
Type: CAZyme
Location: 20400 - 22709 (-)
Type: CAZyme
Location: 20400 - 22709 (-)
Gene ID: k141_11862_22
Type: CAZyme
Location: 22847 - 25414 (-)
Type: CAZyme
Location: 22847 - 25414 (-)
Gene ID: k141_11862_23
Type: TC
Location: 25404 - 26939 (-)
Type: TC
Location: 25404 - 26939 (-)
Gene ID: k141_11862_24
Type: TC
Location: 27015 - 27914 (-)
Type: TC
Location: 27015 - 27914 (-)
Gene ID: k141_11862_25
Type: TC
Location: 27927 - 28871 (-)
Type: TC
Location: 27927 - 28871 (-)
Gene ID: k141_11862_26
Type: CAZyme
Location: 29154 - 31517 (-)
Type: CAZyme
Location: 29154 - 31517 (-)
Gene ID: k141_11862_27
Type: CAZyme
Location: 31552 - 32985 (-)
Type: CAZyme
Location: 31552 - 32985 (-)
Gene ID: k141_11862_28
Type:
Location: 33003 - 33710 (-)
Type:
Location: 33003 - 33710 (-)
Gene ID: k141_11862_29
Type: CAZyme
Location: 33718 - 35148 (-)
Type: CAZyme
Location: 33718 - 35148 (-)
Gene ID: k141_11862_30
Type: CAZyme
Location: 35175 - 37472 (-)
Type: CAZyme
Location: 35175 - 37472 (-)
Gene ID: k141_11862_31
Type:
Location: 37549 - 39273 (-)
Type:
Location: 37549 - 39273 (-)
Gene ID: k141_11862_32
Type: TC
Location: 39347 - 40237 (-)
Type: TC
Location: 39347 - 40237 (-)
Gene ID: k141_11862_33
Type: TC
Location: 40254 - 41192 (-)
Type: TC
Location: 40254 - 41192 (-)
Gene ID: k141_11862_34
Type: TF
Location: 41367 - 43688 (-)
Type: TF
Location: 41367 - 43688 (-)
Gene ID: k141_11862_35
Type: CAZyme
Location: 43714 - 46170 (-)
Type: CAZyme
Location: 43714 - 46170 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Limivivens
Species
Limivivens sp900066135
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.