Cluster: CGMR078421_CGC35
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR078421
- CGC Family ID: CGCFAM_00051
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_122884 | k141_122884_1 | 3 | 1475 | + | 8.A.59.2.1 |
| TF | k141_122884 | k141_122884_2 | 1500 | 2678 | + | HTH_AraC | HTH_AraC |
| CAZyme | k141_122884 | k141_122884_3 | 2775 | 3998 | - | GH112 |
Gene ID: k141_122884_1
Type: TC
Location: 3 - 1475 (+)
Type: TC
Location: 3 - 1475 (+)
Gene ID: k141_122884_2
Type: TF
Location: 1500 - 2678 (+)
Type: TF
Location: 1500 - 2678 (+)
Gene ID: k141_122884_3
Type: CAZyme
Location: 2775 - 3998 (-)
Type: CAZyme
Location: 2775 - 3998 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Limivivens
Species
Limivivens sp900066135
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_122884_1 | vegan > omnivore | 1.58633 | 0.02872 |
| k141_122884_2 | vegan > omnivore | 1.33479 | 0.02872 |
| k141_122884_3 | vegan > omnivore | 1.67045 | 0.02271 |