Cluster: CGMR078421_CGC2
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 6
- Substrate:
- Genome ID: CGMR078421
- CGC Family ID: CGCFAM_00009
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_103489 | k141_103489_4 | 2756 | 3580 | + | 3.A.1.104.1 |
| TC | k141_103489 | k141_103489_5 | 3604 | 4860 | + | 3.A.1.103.6 |
| pfam | k141_103489 | k141_103489_6 | 4875 | 5804 | + | RrnaAD | PCMT | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 |
| NULL(UNKNOWN) | k141_103489 | k141_103489_7 | 5801 | 7093 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_103489 | k141_103489_8 | 7114 | 9657 | + | GT2 | GT2 |
| CAZyme | k141_103489 | k141_103489_9 | 9660 | 12158 | + | GT2 | GT2 |
| CAZyme | k141_103489 | k141_103489_10 | 12155 | 14569 | + | GT2 | GT2 |
| pfam | k141_103489 | k141_103489_11 | 14592 | 17027 | + | YfhO | YfhO |
| STP | k141_103489 | k141_103489_12 | 17024 | 18151 | + | Aminotran_1_2 |
| CAZyme | k141_103489 | k141_103489_13 | 18144 | 19946 | + | GT2 | GT2 |
| CAZyme | k141_103489 | k141_103489_14 | 19966 | 20931 | + | GT2 |
| TC | k141_103489 | k141_103489_15 | 21412 | 22812 | + | 9.B.18.1.1 |
| pfam | k141_103489 | k141_103489_16 | 22838 | 24277 | + | LytR_cpsA_psr |
| CAZyme | k141_103489 | k141_103489_17 | 24277 | 25200 | + | GT2 |
Gene ID: k141_103489_4
Type: TC
Location: 2756 - 3580 (+)
Type: TC
Location: 2756 - 3580 (+)
Gene ID: k141_103489_5
Type: TC
Location: 3604 - 4860 (+)
Type: TC
Location: 3604 - 4860 (+)
Gene ID: k141_103489_6
Type: pfam
Location: 4875 - 5804 (+)
Type: pfam
Location: 4875 - 5804 (+)
Gene ID: k141_103489_7
Type:
Location: 5801 - 7093 (+)
Type:
Location: 5801 - 7093 (+)
Gene ID: k141_103489_8
Type: CAZyme
Location: 7114 - 9657 (+)
Type: CAZyme
Location: 7114 - 9657 (+)
Gene ID: k141_103489_9
Type: CAZyme
Location: 9660 - 12158 (+)
Type: CAZyme
Location: 9660 - 12158 (+)
Gene ID: k141_103489_10
Type: CAZyme
Location: 12155 - 14569 (+)
Type: CAZyme
Location: 12155 - 14569 (+)
Gene ID: k141_103489_11
Type: pfam
Location: 14592 - 17027 (+)
Type: pfam
Location: 14592 - 17027 (+)
Gene ID: k141_103489_12
Type: STP
Location: 17024 - 18151 (+)
Type: STP
Location: 17024 - 18151 (+)
Gene ID: k141_103489_13
Type: CAZyme
Location: 18144 - 19946 (+)
Type: CAZyme
Location: 18144 - 19946 (+)
Gene ID: k141_103489_14
Type: CAZyme
Location: 19966 - 20931 (+)
Type: CAZyme
Location: 19966 - 20931 (+)
Gene ID: k141_103489_15
Type: TC
Location: 21412 - 22812 (+)
Type: TC
Location: 21412 - 22812 (+)
Gene ID: k141_103489_16
Type: pfam
Location: 22838 - 24277 (+)
Type: pfam
Location: 22838 - 24277 (+)
Gene ID: k141_103489_17
Type: CAZyme
Location: 24277 - 25200 (+)
Type: CAZyme
Location: 24277 - 25200 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Limivivens
Species
Limivivens sp900066135
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.