Cluster: CGMR078421_CGC18
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: CGMR078421
- CGC Family ID: CGCFAM_05775
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_54059 | k141_54059_3 | 1220 | 1501 | - | 2.A.7.3.59 |
| pfam | k141_54059 | k141_54059_4 | 1888 | 3273 | + | Lyase_1 | ASL_C2 |
| pfam | k141_54059 | k141_54059_5 | 3276 | 3995 | + | Asp_Glu_race |
| TC | k141_54059 | k141_54059_6 | 4070 | 5608 | + | 2.A.35.2.1 |
| CAZyme | k141_54059 | k141_54059_7 | 5623 | 6477 | + | CE4 |
| CAZyme | k141_54059 | k141_54059_8 | 6482 | 7354 | + | CE4 |
Gene ID: k141_54059_3
Type: TC
Location: 1220 - 1501 (-)
Type: TC
Location: 1220 - 1501 (-)
Gene ID: k141_54059_4
Type: pfam
Location: 1888 - 3273 (+)
Type: pfam
Location: 1888 - 3273 (+)
Gene ID: k141_54059_5
Type: pfam
Location: 3276 - 3995 (+)
Type: pfam
Location: 3276 - 3995 (+)
Gene ID: k141_54059_6
Type: TC
Location: 4070 - 5608 (+)
Type: TC
Location: 4070 - 5608 (+)
Gene ID: k141_54059_7
Type: CAZyme
Location: 5623 - 6477 (+)
Type: CAZyme
Location: 5623 - 6477 (+)
Gene ID: k141_54059_8
Type: CAZyme
Location: 6482 - 7354 (+)
Type: CAZyme
Location: 6482 - 7354 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Limivivens
Species
Limivivens sp900066135
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_54059_3 | vegan > omnivore | 3.28162 | 0.02271 |
| k141_54059_3 | vegetarian > omnivore | 1.12817 | 0.03696 |