Cluster: CGMR078421_CGC16
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 4
- Substrate:
- Genome ID: CGMR078421
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_109 | k141_109_1 | 188 | 3259 | - | GH2 |
| TF | k141_109 | k141_109_2 | 3733 | 4575 | + | HTH_AraC | HTH_AraC |
| CAZyme | k141_109 | k141_109_3 | 4586 | 6979 | - | GH31_15 |
| pfam | k141_109 | k141_109_4 | 7061 | 8581 | - | RACo_C_ter | RACo_linker | Raco_middle |
| CAZyme | k141_109 | k141_109_5 | 8581 | 10596 | - | GH13_4 |
| TC | k141_109 | k141_109_6 | 11294 | 11881 | + | 2.A.107.1.2 |
| NULL(UNKNOWN) | k141_109 | k141_109_7 | 11901 | 13301 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_109 | k141_109_8 | 13609 | 14712 | - | GH172 |
Gene ID: k141_109_1
Type: CAZyme
Location: 188 - 3259 (-)
Type: CAZyme
Location: 188 - 3259 (-)
Gene ID: k141_109_2
Type: TF
Location: 3733 - 4575 (+)
Type: TF
Location: 3733 - 4575 (+)
Gene ID: k141_109_3
Type: CAZyme
Location: 4586 - 6979 (-)
Type: CAZyme
Location: 4586 - 6979 (-)
Gene ID: k141_109_4
Type: pfam
Location: 7061 - 8581 (-)
Type: pfam
Location: 7061 - 8581 (-)
Gene ID: k141_109_5
Type: CAZyme
Location: 8581 - 10596 (-)
Type: CAZyme
Location: 8581 - 10596 (-)
Gene ID: k141_109_6
Type: TC
Location: 11294 - 11881 (+)
Type: TC
Location: 11294 - 11881 (+)
Gene ID: k141_109_7
Type:
Location: 11901 - 13301 (-)
Type:
Location: 11901 - 13301 (-)
Gene ID: k141_109_8
Type: CAZyme
Location: 13609 - 14712 (-)
Type: CAZyme
Location: 13609 - 14712 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Limivivens
Species
Limivivens sp900066135
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.