Cluster: CGMR078337_CGC1
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR078337
- CGC Family ID: CGCFAM_05773
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_139924 | k141_139924_2 | 398 | 2734 | + | 3.A.7.7.1 |
| CAZyme | k141_139924 | k141_139924_3 | 2766 | 4709 | + | GH23 |
| TF | k141_139924 | k141_139924_4 | 4873 | 5871 | - | HTH_AraC |
| TC | k141_139924 | k141_139924_5 | 6166 | 6771 | + | 3.A.1.31.1 |
| TC | k141_139924 | k141_139924_6 | 6771 | 7511 | + | 3.A.1.31.1 |
| TC | k141_139924 | k141_139924_7 | 7511 | 9004 | + | 3.A.1.31.2 |
| NULL(UNKNOWN) | k141_139924 | k141_139924_8 | 8985 | 9647 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_139924 | k141_139924_9 | 9640 | 11379 | + | 3.A.1.21.1 |
| TC | k141_139924 | k141_139924_10 | 11376 | 13112 | + | 3.A.1.21.1 |
Gene ID: k141_139924_2
Type: TC
Location: 398 - 2734 (+)
Type: TC
Location: 398 - 2734 (+)
Gene ID: k141_139924_3
Type: CAZyme
Location: 2766 - 4709 (+)
Type: CAZyme
Location: 2766 - 4709 (+)
Gene ID: k141_139924_4
Type: TF
Location: 4873 - 5871 (-)
Type: TF
Location: 4873 - 5871 (-)
Gene ID: k141_139924_5
Type: TC
Location: 6166 - 6771 (+)
Type: TC
Location: 6166 - 6771 (+)
Gene ID: k141_139924_6
Type: TC
Location: 6771 - 7511 (+)
Type: TC
Location: 6771 - 7511 (+)
Gene ID: k141_139924_7
Type: TC
Location: 7511 - 9004 (+)
Type: TC
Location: 7511 - 9004 (+)
Gene ID: k141_139924_8
Type:
Location: 8985 - 9647 (+)
Type:
Location: 8985 - 9647 (+)
Gene ID: k141_139924_9
Type: TC
Location: 9640 - 11379 (+)
Type: TC
Location: 9640 - 11379 (+)
Gene ID: k141_139924_10
Type: TC
Location: 11376 - 13112 (+)
Type: TC
Location: 11376 - 13112 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Fumia
Species
Fumia sp902493155
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_139924_5 | vegetarian > vegan | 1.42118 | 0.01560 |
| k141_139924_6 | vegetarian > vegan | 1.08586 | 0.01560 |
| k141_139924_8 | vegetarian > vegan | 1.01357 | 0.01560 |
| k141_139924_9 | vegetarian > vegan | 1.00372 | 0.01560 |
| k141_139924_10 | vegetarian > vegan | 1.25384 | 0.01560 |