Cluster: CGMR077911_CGC19
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate: alpha-glucan
- Genome ID: CGMR077911
- CGC Family ID: CGCFAM_06447
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_422904 | k141_422904_25 | 25588 | 26061 | + | 9.A.24.1.2 |
| pfam | k141_422904 | k141_422904_26 | 26642 | 28141 | + | FGGY_N | FGGY_C |
| TC | k141_422904 | k141_422904_27 | 28172 | 28900 | + | 1.A.8.2.9 |
| STP | k141_422904 | k141_422904_28 | 28897 | 30192 | - | Pyr_redox_2 |
| pfam | k141_422904 | k141_422904_29 | 30192 | 30881 | - | GDPD |
| CAZyme | k141_422904 | k141_422904_30 | 30961 | 32784 | - | GH13_38 |
| pfam | k141_422904 | k141_422904_31 | 32901 | 33569 | - | Hydrolase | HAD_2 |
| TF | k141_422904 | k141_422904_32 | 33575 | 34606 | - | LacI |
| TC | k141_422904 | k141_422904_33 | 34965 | 38072 | + | 1.B.14.6.1 |
| pfam | k141_422904 | k141_422904_34 | 38083 | 39660 | + | SusD_RagB | SusD-like_3 |
| NULL(UNKNOWN) | k141_422904 | k141_422904_35 | 39680 | 39886 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_422904 | k141_422904_36 | 40081 | 41733 | - | 2.A.21.3.21 |
Gene ID: k141_422904_25
Type: TC
Location: 25588 - 26061 (+)
Type: TC
Location: 25588 - 26061 (+)
Gene ID: k141_422904_26
Type: pfam
Location: 26642 - 28141 (+)
Type: pfam
Location: 26642 - 28141 (+)
Gene ID: k141_422904_27
Type: TC
Location: 28172 - 28900 (+)
Type: TC
Location: 28172 - 28900 (+)
Gene ID: k141_422904_28
Type: STP
Location: 28897 - 30192 (-)
Type: STP
Location: 28897 - 30192 (-)
Gene ID: k141_422904_29
Type: pfam
Location: 30192 - 30881 (-)
Type: pfam
Location: 30192 - 30881 (-)
Gene ID: k141_422904_30
Type: CAZyme
Location: 30961 - 32784 (-)
Type: CAZyme
Location: 30961 - 32784 (-)
Gene ID: k141_422904_31
Type: pfam
Location: 32901 - 33569 (-)
Type: pfam
Location: 32901 - 33569 (-)
Gene ID: k141_422904_32
Type: TF
Location: 33575 - 34606 (-)
Type: TF
Location: 33575 - 34606 (-)
Gene ID: k141_422904_33
Type: TC
Location: 34965 - 38072 (+)
Type: TC
Location: 34965 - 38072 (+)
Gene ID: k141_422904_34
Type: pfam
Location: 38083 - 39660 (+)
Type: pfam
Location: 38083 - 39660 (+)
Gene ID: k141_422904_35
Type:
Location: 39680 - 39886 (+)
Type:
Location: 39680 - 39886 (+)
Gene ID: k141_422904_36
Type: TC
Location: 40081 - 41733 (-)
Type: TC
Location: 40081 - 41733 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Flavobacteriales
Family
Flavobacteriaceae
Genus
Arenibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.