Cluster: CGMR077736_CGC17
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR077736
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_101404 | k141_101404_3 | 2373 | 2816 | + | 4.A.6.1.16 |
| pfam | k141_101404 | k141_101404_4 | 2816 | 3097 | + | YajC |
| TC | k141_101404 | k141_101404_5 | 3134 | 3616 | + | 4.A.6.1.4 |
| TC | k141_101404 | k141_101404_6 | 3706 | 4506 | + | 4.A.6.1.4 |
| TC | k141_101404 | k141_101404_7 | 4496 | 5578 | + | 4.A.6.1.4 |
| TF | k141_101404 | k141_101404_8 | 5764 | 6495 | + | GntR |
| STP | k141_101404 | k141_101404_9 | 6610 | 7776 | + | SIS | SIS |
| CAZyme | k141_101404 | k141_101404_10 | 7894 | 9063 | + | CE9 |
Gene ID: k141_101404_3
Type: TC
Location: 2373 - 2816 (+)
Type: TC
Location: 2373 - 2816 (+)
Gene ID: k141_101404_4
Type: pfam
Location: 2816 - 3097 (+)
Type: pfam
Location: 2816 - 3097 (+)
Gene ID: k141_101404_5
Type: TC
Location: 3134 - 3616 (+)
Type: TC
Location: 3134 - 3616 (+)
Gene ID: k141_101404_6
Type: TC
Location: 3706 - 4506 (+)
Type: TC
Location: 3706 - 4506 (+)
Gene ID: k141_101404_7
Type: TC
Location: 4496 - 5578 (+)
Type: TC
Location: 4496 - 5578 (+)
Gene ID: k141_101404_8
Type: TF
Location: 5764 - 6495 (+)
Type: TF
Location: 5764 - 6495 (+)
Gene ID: k141_101404_9
Type: STP
Location: 6610 - 7776 (+)
Type: STP
Location: 6610 - 7776 (+)
Gene ID: k141_101404_10
Type: CAZyme
Location: 7894 - 9063 (+)
Type: CAZyme
Location: 7894 - 9063 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.