Cluster: CGMR076943_CGC3
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: CGMR076943
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_75791 | k141_75791_3 | 1996 | 3180 | + | GT5 |
| TC | k141_75791 | k141_75791_4 | 3268 | 4056 | + | 3.A.1.15.12 |
| pfam | k141_75791 | k141_75791_5 | 4186 | 4443 | + | Ribosomal_L31 |
| pfam | k141_75791 | k141_75791_6 | 4551 | 5252 | - | RNase_T |
| CAZyme | k141_75791 | k141_75791_7 | 5263 | 6984 | - | GH13_16 |
| peptidase | k141_75791 | k141_75791_8 | 7129 | 8025 | + | S33.UPW |
| CAZyme | k141_75791 | k141_75791_9 | 8022 | 9116 | + | GT4 |
Gene ID: k141_75791_3
Type: CAZyme
Location: 1996 - 3180 (+)
Type: CAZyme
Location: 1996 - 3180 (+)
Gene ID: k141_75791_4
Type: TC
Location: 3268 - 4056 (+)
Type: TC
Location: 3268 - 4056 (+)
Gene ID: k141_75791_5
Type: pfam
Location: 4186 - 4443 (+)
Type: pfam
Location: 4186 - 4443 (+)
Gene ID: k141_75791_6
Type: pfam
Location: 4551 - 5252 (-)
Type: pfam
Location: 4551 - 5252 (-)
Gene ID: k141_75791_7
Type: CAZyme
Location: 5263 - 6984 (-)
Type: CAZyme
Location: 5263 - 6984 (-)
Gene ID: k141_75791_8
Type: peptidase
Location: 7129 - 8025 (+)
Type: peptidase
Location: 7129 - 8025 (+)
Gene ID: k141_75791_9
Type: CAZyme
Location: 8022 - 9116 (+)
Type: CAZyme
Location: 8022 - 9116 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Microbacteriaceae
Genus
Clavibacter
Species
Clavibacter sepedonicus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.