Cluster: CGMR076943_CGC24
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: CGMR076943
- CGC Family ID: CGCFAM_00711
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_163747 | k141_163747_7 | 5571 | 7373 | - | GH13_10 |
| CAZyme | k141_163747 | k141_163747_8 | 7370 | 9721 | - | GH13_26 |
| NULL(UNKNOWN) | k141_163747 | k141_163747_9 | 9718 | 10470 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_163747 | k141_163747_10 | 10535 | 11923 | - | CBM48 | GH13_11 |
| NULL(UNKNOWN) | k141_163747 | k141_163747_11 | 12131 | 12463 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_163747 | k141_163747_12 | 12722 | 13372 | + | 3.A.1.30.1 |
| TC | k141_163747 | k141_163747_13 | 13420 | 14181 | + | 3.A.1.23.8 |
Gene ID: k141_163747_7
Type: CAZyme
Location: 5571 - 7373 (-)
Type: CAZyme
Location: 5571 - 7373 (-)
Gene ID: k141_163747_8
Type: CAZyme
Location: 7370 - 9721 (-)
Type: CAZyme
Location: 7370 - 9721 (-)
Gene ID: k141_163747_9
Type:
Location: 9718 - 10470 (-)
Type:
Location: 9718 - 10470 (-)
Gene ID: k141_163747_10
Type: CAZyme
Location: 10535 - 11923 (-)
Type: CAZyme
Location: 10535 - 11923 (-)
Gene ID: k141_163747_11
Type:
Location: 12131 - 12463 (+)
Type:
Location: 12131 - 12463 (+)
Gene ID: k141_163747_12
Type: TC
Location: 12722 - 13372 (+)
Type: TC
Location: 12722 - 13372 (+)
Gene ID: k141_163747_13
Type: TC
Location: 13420 - 14181 (+)
Type: TC
Location: 13420 - 14181 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Microbacteriaceae
Genus
Clavibacter
Species
Clavibacter sepedonicus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.