Cluster: CGMR076943_CGC17
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR076943
- CGC Family ID: CGCFAM_01637
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_189721 | k141_189721_5 | 4594 | 5133 | + | 3.A.1.1.48 |
| STP | k141_189721 | k141_189721_6 | 5290 | 5949 | + | SBP_bac_1 |
| TC | k141_189721 | k141_189721_7 | 5946 | 6962 | + | 3.A.1.1.48 |
| TC | k141_189721 | k141_189721_8 | 6959 | 7927 | + | 3.A.1.1.48 |
| CAZyme | k141_189721 | k141_189721_9 | 8064 | 11117 | + | GH2 |
Gene ID: k141_189721_5
Type: TC
Location: 4594 - 5133 (+)
Type: TC
Location: 4594 - 5133 (+)
Gene ID: k141_189721_6
Type: STP
Location: 5290 - 5949 (+)
Type: STP
Location: 5290 - 5949 (+)
Gene ID: k141_189721_7
Type: TC
Location: 5946 - 6962 (+)
Type: TC
Location: 5946 - 6962 (+)
Gene ID: k141_189721_8
Type: TC
Location: 6959 - 7927 (+)
Type: TC
Location: 6959 - 7927 (+)
Gene ID: k141_189721_9
Type: CAZyme
Location: 8064 - 11117 (+)
Type: CAZyme
Location: 8064 - 11117 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Microbacteriaceae
Genus
Clavibacter
Species
Clavibacter sepedonicus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.